Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24502 Corylus avellana HOM05D002653 ORTHO05D002623 9.4e-150 533.5 269 100.0
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 2.6e-139 498.8 258 97.3
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 1.4e-121 439.9 257 87.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.9e-118 429.5 258 84.1
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.3e-110 401.7 258 73.6
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 5.6e-110 401.4 254 78.0
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.2e-109 400.2 258 73.3
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 6.2e-109 397.9 258 76.0
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 3.8e-106 388.7 256 76.6
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 2.4e-105 386.0 258 74.0
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 1.6e-104 383.3 258 72.5
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 3.5e-104 382.1 256 73.4
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.0e-104 381.3 256 77.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 1.3e-103 380.2 258 76.7
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.7e-103 379.8 258 76.4
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.7e-103 379.8 258 76.4
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.7e-103 379.8 258 76.4
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 2.3e-103 379.4 256 73.4
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 3.0e-103 379.0 258 72.5
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 3.0e-103 379.0 259 71.4
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.6e-101 372.1 262 73.3
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 8.1e-101 370.9 258 71.3
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 8.1e-101 370.9 256 70.7
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 1.5e-99 366.7 256 74.6
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 3.8e-98 362.1 256 73.4
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 1.9e-97 359.8 258 70.5
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 3.2e-97 359.0 260 68.5
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.2e-97 358.6 258 69.0
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 3.5e-96 355.5 256 71.1
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.0e-95 354.0 257 72.4
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 8.7e-95 350.9 256 71.5
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 2.5e-94 349.4 256 71.1
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 5.6e-94 348.2 257 71.2
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.3e-93 347.1 259 67.2
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.3e-93 347.1 256 70.7
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 1.6e-93 346.7 259 66.0
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.6e-93 346.7 256 70.7
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 1.6e-93 346.7 262 67.2
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.8e-93 345.9 260 68.1
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.8e-93 345.9 260 68.1
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 3.6e-93 345.5 266 69.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 3.6e-93 345.5 258 67.8
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 4.8e-93 345.1 260 69.2
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 4.8e-93 345.1 256 70.7
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 2.0e-91 339.7 258 65.5
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 2.0e-91 339.7 261 67.4
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.6e-91 339.3 257 67.7
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 7.6e-91 337.8 260 66.5
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 9.9e-91 337.4 260 65.4
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 1.3e-90 337.0 262 68.7
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 2.2e-90 336.3 258 67.8
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 3.8e-90 335.5 263 68.8
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 8.4e-90 334.3 257 65.0
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.1e-89 334.0 258 69.0
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 7.1e-89 331.3 258 66.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 7.1e-89 331.3 260 66.2
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 9.3e-89 330.9 264 67.8
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.2e-88 330.5 258 63.6
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.0e-88 328.2 255 63.9
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.3e-87 327.0 256 64.1
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 1.8e-87 326.6 264 66.7
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.7e-87 324.7 255 63.1
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.9e-86 323.2 257 63.8
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 9.6e-86 320.9 244 65.6
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 5.3e-84 315.1 258 63.2
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 9.0e-84 314.3 258 64.3
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 2.2e-82 309.7 259 62.5
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.9e-81 306.6 256 61.3
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.2e-81 305.4 256 60.9
MD09G1170300 Malus domestica HOM05D002653 ORTHO05D002623 9.3e-81 304.3 209 75.1
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 1.0e-79 300.8 261 62.1
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 3.0e-79 299.3 259 61.8
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 3.0e-79 299.3 259 61.8
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 3.0e-79 299.3 259 62.2
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 3.0e-79 299.3 259 62.2
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 5.1e-79 298.5 261 60.9
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 6.7e-79 298.1 261 61.7
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 8.7e-79 297.7 267 59.9
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 4.3e-78 295.4 261 61.3
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 7.4e-78 294.7 262 61.5
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 9.6e-78 294.3 261 60.9
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 9.6e-78 294.3 261 60.9
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.3e-77 293.9 277 59.9
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.6e-77 293.5 261 60.5
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 2.4e-76 289.7 261 60.2
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 1.5e-75 287.0 247 62.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 2.0e-75 286.6 274 57.7
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 1.0e-66 257.7 259 54.8
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 3.8e-66 255.8 267 55.4
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.5e-66 255.0 259 54.1
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.1e-65 254.2 256 52.0
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 9.4e-65 251.1 258 53.1
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.6e-64 249.2 172 73.3
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 4.8e-61 238.8 256 53.9
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.5e-57 226.5 256 48.0
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 2.7e-56 223.0 279 48.0
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.7e-56 223.0 223 56.1
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 1.1e-52 211.1 246 48.0
Hma1.2p1_2738F.1_g327700 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.1e-52 211.1 192 57.3
arahy.Tifrunner.gnm1.ann1.FGIJ89 Arachis hypogaea HOM05D002653 ORTHO05D002623 3.6e-48 196.1 255 46.7
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.3e-34 151.0 238 43.3
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 1.2e-32 144.4 186 45.7
HPP92_000045 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.0e-31 141.4 136 55.1
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.2e-30 137.9 254 35.8
CBR_g47051 Chara braunii HOM05D002653 ORTHO05D002623 2.5e-25 120.2 232 35.3
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 3.0e-23 113.2 101 60.4
HPP92_010163 Vanilla planifolia HOM05D002653 ORTHO05D002623 6.6e-18 95.5 113 49.6
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 2.5e-09 67.0 146 33.6
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 4.3e-09 66.2 151 31.8
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 9.5e-09 65.1 125 32.8
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 1.2e-08 64.7 146 33.6
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.2e-08 64.7 146 32.9
SalBow8G5116 Salvia bowleyana HOM05D001092 ORTHO05D000923 1.2e-08 64.7 144 32.6
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.6e-08 64.3 125 34.4
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.6e-08 64.3 125 34.4
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 1.6e-08 64.3 144 31.9
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 2.1e-08 63.9 146 32.2
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
A08p06860 Brassica napus HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
CSS0037314 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 2.8e-08 63.5 104 36.5
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 2.8e-08 63.5 146 32.9
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 3.6e-08 63.2 146 32.9
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 3.6e-08 63.2 146 32.9
SHI00082 Sapria himalayana HOM05D001092 ORTHO05D000923 3.6e-08 63.2 123 33.3
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 4.7e-08 62.8 125 32.8
Oeu033616.1 Olea europaea HOM05D001092 ORTHO05D000923 4.7e-08 62.8 146 32.2
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 6.2e-08 62.4 146 30.1
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 6.2e-08 62.4 147 30.6
BcaB07g33792 Brassica carinata HOM05D001092 ORTHO05D000923 8.1e-08 62.0 125 33.6
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 8.1e-08 62.0 147 30.6
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 8.1e-08 62.0 146 30.8
BraA08t32704Z Brassica rapa HOM05D001092 ORTHO05D000923 1.1e-07 61.6 146 32.2
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.1e-07 61.6 104 34.6
COL.COLO4_34529 Corchorus olitorius HOM05D001092 ORTHO05D000923 1.4e-07 61.2 146 30.8
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 1.4e-07 61.2 125 32.8
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 1.8e-07 60.8 125 33.6
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 1.8e-07 60.8 90 38.9
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 1.8e-07 60.8 146 28.1
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 2.3e-07 60.5 146 30.1
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.3e-07 60.5 146 30.1
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 2.3e-07 60.5 146 29.5
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 4.0e-07 59.7 146 30.1
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 4.0e-07 59.7 146 30.1
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 4.0e-07 59.7 147 31.3
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 4.0e-07 59.7 125 30.4
Nn2g14500 Nelumbo nucifera HOM05D001092 ORTHO05D000923 4.0e-07 59.7 103 35.0
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 4.0e-07 59.7 125 30.4
Solyc09g009370.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 4.0e-07 59.7 146 28.1
Sopen09g004100 Solanum pennellii HOM05D001092 ORTHO05D000923 4.0e-07 59.7 146 28.1
Actinidia18490 Actinidia chinensis HOM05D001092 ORTHO05D000923 5.2e-07 59.3 104 32.7
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 5.2e-07 59.3 125 31.2
HPP92_008100 Vanilla planifolia HOM05D001092 ORTHO05D000923 5.2e-07 59.3 146 29.5
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 6.8e-07 58.9 146 30.1
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 2.0e-06 57.4 37 75.7


User provided reference genes

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