Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 0.0e+00 1248.8 628 100.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.5e-283 979.2 563 90.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 4.7e-224 781.6 565 74.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-222 776.5 565 74.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 5.2e-215 751.5 565 70.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 9.7e-214 747.3 569 70.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 7.0e-212 741.1 569 69.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.6e-211 740.0 568 69.7
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.0e-210 737.3 563 69.6
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.5e-209 731.5 564 70.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.0e-207 727.2 564 69.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.5e-206 723.4 566 69.4
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.3e-205 720.3 578 67.3
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 2.4e-204 716.1 465 81.7
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.2e-201 705.7 564 67.7
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.6e-200 703.4 564 67.6
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.1e-200 703.0 563 68.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.7e-200 702.6 601 65.2
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.0e-199 698.7 564 67.0
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.4e-198 695.7 564 66.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.7e-198 694.9 575 65.7
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.4e-196 689.5 563 67.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 7.0e-196 688.0 564 65.8
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 5.9e-195 684.9 563 67.0
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 5.9e-195 684.9 572 65.9
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.0e-194 684.1 563 65.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.0e-194 681.8 564 65.4
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 8.6e-194 681.0 549 67.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.5e-193 680.2 566 66.3
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.1e-192 676.4 564 64.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.8e-192 676.0 564 64.7
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.0e-191 674.1 564 65.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.0e-191 672.2 563 65.0
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.0e-191 672.2 564 64.5
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.6e-190 669.5 564 64.7
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 9.8e-190 667.5 566 65.2
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.7e-189 666.8 567 64.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.1e-188 664.1 565 64.4
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.4e-188 662.9 564 66.0
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 3.5e-187 659.1 564 64.0
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 8.6e-186 654.4 606 61.1
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.1e-184 649.8 552 64.7
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-183 647.5 566 64.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.3e-183 646.4 565 63.5
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.1e-180 637.5 565 62.5
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-180 636.3 549 64.3
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.4e-180 636.3 563 61.5
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 2.7e-179 632.9 573 61.4
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 4.6e-179 632.1 563 60.7
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-178 630.9 569 62.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 5.0e-178 628.6 563 62.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 3.3e-177 625.9 563 61.1
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.7e-176 622.1 573 61.3
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.1e-175 620.9 563 59.9
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.0e-175 619.0 584 60.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 5.8e-174 615.1 564 60.1
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-172 610.5 565 61.2
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 3.2e-172 609.4 563 59.0
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 5.4e-172 608.6 576 61.1
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 7.0e-172 608.2 568 59.2
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.2e-171 607.4 578 58.3
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.3e-170 604.0 565 58.9
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 9.5e-169 597.8 575 58.4
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.3e-165 584.7 455 68.8
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.5e-163 579.3 375 80.5
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 4.4e-158 562.4 576 56.1
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.3e-157 560.8 568 57.4
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.9e-157 559.7 550 56.5
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.9e-156 557.0 550 56.4
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.5e-155 552.7 550 56.7
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 6.0e-155 552.0 566 54.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.0e-154 551.2 555 56.2
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.5e-153 546.6 565 56.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 4.7e-152 542.3 550 55.3
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 6.9e-151 538.5 592 53.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.5e-150 537.3 437 65.2
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 9.9e-150 534.6 564 53.5
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-146 524.6 507 58.8
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.7e-146 523.9 598 51.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.4e-143 514.2 663 49.6
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.5e-142 509.2 565 52.4
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 4.9e-141 505.8 474 58.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.2e-139 501.1 554 52.3
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.3e-138 496.9 553 51.7
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.5e-137 493.4 548 52.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.1e-135 488.0 549 50.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 2.4e-135 486.9 569 49.9
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.1e-135 486.5 576 49.1
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 6.9e-135 485.3 561 49.4
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 6.9e-135 485.3 578 48.8
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.5e-134 482.6 616 45.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 3.2e-132 476.5 571 48.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 7.1e-132 475.3 558 48.6
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.1e-129 468.0 401 65.3
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.8e-128 463.4 563 48.8
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.8e-127 460.7 520 52.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 9.0e-127 458.4 550 48.0
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.5e-126 457.6 551 47.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.9e-125 453.4 495 53.1
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.8e-120 436.8 507 51.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.1e-119 433.3 553 47.9
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 4.1e-119 433.0 553 48.1
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 9.0e-119 431.8 566 47.5
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 9.0e-119 431.8 557 46.7
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.0e-118 430.6 551 47.5
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 5.9e-118 429.1 557 46.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 7.7e-118 428.7 558 46.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 7.7e-118 428.7 558 46.2
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.0e-117 428.3 557 46.5
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 5.0e-117 426.0 557 46.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.4e-116 424.5 554 46.8
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.6e-115 419.9 544 45.6
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 6.1e-115 419.1 553 46.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 7.9e-115 418.7 560 46.2
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.1e-113 414.8 459 54.9
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.0e-113 414.1 556 46.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 2.5e-113 413.7 555 45.6
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.4e-106 391.3 570 43.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 7.0e-103 379.0 582 41.1
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.5e-102 377.9 559 42.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.1e-100 371.7 568 41.2
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-97 361.7 352 58.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 5.7e-97 359.4 549 41.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.8e-95 354.4 483 46.6
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 3.1e-95 353.6 559 41.1
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.5e-92 344.0 579 39.4
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.2e-92 343.6 287 62.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.6e-91 341.3 252 71.0
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.7e-86 322.4 571 37.0
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.7e-85 321.2 566 36.7
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 8.0e-83 312.4 286 61.2
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 6.8e-82 309.3 580 36.9
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.3e-72 276.2 192 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-71 275.0 576 33.3
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 5.4e-71 273.1 576 34.4
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.0e-66 258.8 388 41.2
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.4e-63 248.4 245 57.6
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 3.5e-54 217.2 394 39.3
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-52 212.2 198 59.1
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-50 204.9 552 36.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-49 202.2 230 54.3
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 7.1e-47 193.0 209 51.2
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.7e-38 164.5 147 55.1
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 2.3e-37 161.4 234 47.0
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 3.6e-35 154.1 90 87.8
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 6.2e-35 153.3 119 66.4
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.5e-33 148.7 215 43.3
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 7.1e-31 139.8 113 72.6
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 4.3e-28 130.6 204 42.6
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.6e-28 130.2 193 42.5
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 3.6e-27 127.5 91 74.7
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 9.3e-23 112.8 83 74.7
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.5e-17 94.0 129 48.1
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 8.4e-16 89.7 144 36.1
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.2e-15 87.8 236 33.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-12 78.2 53 64.2
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 6.2e-11 73.6 102 42.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.1e-10 70.9 57 59.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 4.1e-10 70.9 75 46.7
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.2e-09 69.3 77 45.5
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.6e-09 68.2 186 34.9
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 1.3e-08 65.9 107 38.3
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-06 58.9 94 37.2
MELO3C029664.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.6e-06 57.4 61 54.1
arahy.Tifrunner.gnm1.ann1.385P84 Arachis hypogaea HOM05D000055 ORTHO05D001675 6.1e-06 57.0 44 65.9


User provided reference genes

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