Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 2279.6 1176 100.0
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1979.5 1192 87.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1656.7 1289 70.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1583.9 1126 74.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1448.7 1212 65.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1448.0 1212 65.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1432.5 1200 66.2
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1431.8 1198 66.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1429.8 1213 65.0
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1425.6 1216 65.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1407.9 1216 64.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1401.0 1226 64.3
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1398.6 1256 62.4
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1393.3 1260 61.5
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1367.8 1193 65.2
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1355.5 1185 63.3
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1342.4 1220 62.0
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1328.5 1220 61.7
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1326.6 1190 63.0
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1325.1 1203 62.8
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1310.0 1197 60.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1309.7 965 71.3
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1307.7 1195 62.3
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1304.3 1217 60.6
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1300.0 1237 59.2
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1297.7 1193 60.6
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1297.0 1197 60.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1290.4 1272 57.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1284.2 1059 64.9
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1281.2 1247 58.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 1207 59.7
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1272.7 1267 57.3
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1269.2 1334 55.5
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1265.0 1226 59.2
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1264.6 1186 59.8
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1262.3 1194 59.0
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1260.4 1197 59.5
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1259.6 1196 60.4
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1258.0 923 71.9
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1257.3 1070 63.7
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1255.0 1075 63.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1252.7 1213 59.2
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1251.5 1228 57.6
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1249.2 1148 61.5
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1247.3 1225 58.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1244.2 1197 58.6
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1242.6 1191 58.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1235.7 965 66.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1233.4 1202 57.7
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1229.5 1204 57.3
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1226.8 1209 57.0
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 1198 57.8
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1221.8 1264 55.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1217.2 1268 57.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1214.1 1263 55.3
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1209.9 1231 56.1
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1208.4 1199 59.3
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1202.2 1248 55.8
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1199.5 1147 59.4
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1196.4 1279 53.2
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1181.0 972 64.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1179.5 965 65.8
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1171.0 925 68.5
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1170.2 1287 54.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1169.8 1278 54.5
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1145.6 1253 52.7
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1129.8 1252 53.6
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1129.0 1201 54.5
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1125.5 1195 54.6
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1123.6 1262 53.2
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1119.0 1192 56.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1119.0 968 62.1
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1115.9 1261 52.9
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1095.5 1263 51.4
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1092.4 822 70.1
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1082.0 885 66.9
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1081.6 941 64.2
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 2.1e-310 1069.3 870 67.2
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 6.7e-309 1064.3 1075 55.0
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 5.7e-308 1061.2 973 61.0
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 8.2e-299 1030.8 1006 57.6
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.3e-296 1023.5 859 63.1
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.6e-289 1000.0 1041 54.1
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.5e-287 993.4 866 62.2
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-270 937.2 724 70.6
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 2.1e-262 909.8 1205 46.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.8e-261 906.7 742 65.8
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 5.2e-261 905.2 740 65.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.0e-248 862.8 1003 48.5
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-246 857.1 1068 46.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.0e-245 851.3 1023 46.9
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.9e-243 846.3 1168 44.9
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 9.3e-234 814.7 682 67.0
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.8e-230 803.1 1070 47.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.0e-229 799.3 983 46.6
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.7e-225 786.6 600 68.7
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 4.8e-222 775.8 718 61.3
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.1e-221 773.1 1025 44.4
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 2.9e-219 766.5 666 62.3
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 7.2e-210 735.3 714 58.1
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 5.5e-178 629.4 503 62.8
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.1e-169 600.9 549 60.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.2e-165 585.5 415 70.8
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-152 544.7 799 41.8
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 6.2e-137 493.0 791 41.3
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-136 491.9 420 62.1
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.4e-133 481.1 440 62.0
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-128 465.7 421 61.0
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.7e-126 458.4 376 63.0
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.7e-115 419.5 340 66.8
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-75 288.5 266 61.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 2.4e-72 278.5 378 38.9
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-69 269.6 489 37.4
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.0e-66 258.8 241 60.6
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.1e-60 238.8 396 41.2
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.0e-59 236.5 254 53.9
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 5.2e-59 234.2 255 55.3
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.7e-57 229.2 263 47.5
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 5.4e-56 224.2 165 70.3
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.0e-55 222.2 165 64.8
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 4.5e-55 221.1 440 40.0
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 7.7e-55 220.3 231 51.5
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.3e-54 218.8 707 28.4
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.2e-49 202.2 206 55.3
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 8.6e-46 190.3 440 31.1
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-41 175.6 476 31.1
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.7e-41 174.9 110 80.9
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.1e-40 173.3 640 27.8
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-39 169.9 208 48.6
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 6.0e-39 167.5 667 26.4
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.8e-39 167.2 136 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.7e-38 166.0 385 32.2
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.5e-37 162.2 650 25.4
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.5e-37 162.2 126 63.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.2e-36 159.8 691 24.9
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.5e-34 152.9 198 45.5
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.0e-34 152.5 172 48.3
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.7e-33 148.3 157 49.7
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.4e-32 146.4 350 33.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-31 143.3 301 34.2
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.6e-31 141.4 245 40.8
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.5e-29 135.6 489 25.2
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-28 132.9 727 24.8
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 2.1e-28 132.5 114 64.0
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.4e-27 129.8 725 24.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-24 119.8 756 23.4
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-24 119.0 73 79.5
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.2e-23 116.7 82 64.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-21 108.6 297 28.3
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 1.4e-19 103.2 106 49.1
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.8e-19 102.8 69 76.8
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 9.9e-18 97.1 283 33.2
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.2e-16 91.7 261 27.6
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 9.3e-16 90.5 174 37.4
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.6e-15 88.2 434 24.9
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 9.6e-13 80.5 481 24.3
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-12 79.3 241 34.4
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.8e-10 71.2 101 43.6
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 3.8e-09 68.6 144 38.2
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 6.4e-09 67.8 183 33.9
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 5.4e-08 64.7 92 45.7
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 9.3e-08 63.9 101 41.6
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 1.6e-07 63.2 86 46.5
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 7.8e-07 60.8 108 38.0


User provided reference genes

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