Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.0e-148 528.5 265 100.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.1e-129 463.8 237 98.7
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.5e-127 457.6 237 97.5
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.4e-123 444.1 237 92.4
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.2e-120 436.8 237 90.3
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.0e-120 436.0 237 89.9
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 4.5e-120 434.9 237 90.3
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 7.7e-120 434.1 237 91.1
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.0e-119 433.7 237 90.3
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.7e-119 433.0 238 91.2
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 5.0e-119 431.4 237 89.9
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.9e-118 429.5 237 89.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.5e-118 429.1 233 90.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.5e-118 429.1 237 90.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 4.2e-118 428.3 237 88.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 4.7e-117 424.9 236 89.0
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.1e-117 424.5 235 88.5
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.3e-116 422.5 235 89.4
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.7e-116 421.0 237 88.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 8.8e-116 420.6 235 88.9
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-115 420.2 237 87.8
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.0e-115 419.5 237 86.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.3e-115 418.7 237 86.5
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-114 416.8 238 87.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.2e-114 416.0 237 87.3
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.8e-114 415.6 237 86.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 8.2e-114 414.1 237 86.9
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.4e-113 413.3 238 86.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.4e-113 413.3 237 84.8
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.8e-113 412.9 237 85.7
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.8e-113 412.9 236 86.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.4e-113 412.5 237 85.7
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.3e-113 411.4 237 85.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.3e-113 411.4 237 86.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.6e-112 409.1 235 87.2
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.6e-112 409.1 237 86.1
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.5e-112 408.7 235 83.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.5e-112 408.7 236 87.3
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.0e-111 407.1 236 86.9
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.0e-111 407.1 235 83.4
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.2e-111 406.0 250 82.8
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 3.8e-111 405.2 235 83.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 5.0e-111 404.8 235 83.8
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.0e-111 404.8 271 77.1
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-110 403.7 266 78.2
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.1e-110 403.7 237 84.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.5e-110 402.5 226 87.2
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.5e-110 402.5 268 77.6
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.2e-110 402.1 225 87.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.2e-109 400.2 237 84.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.6e-109 399.8 231 85.3
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.1e-109 399.4 235 83.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 8.0e-109 397.5 223 86.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.0e-108 397.1 236 83.1
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.4e-108 396.7 237 81.4
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.4e-108 396.7 227 84.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.3e-108 396.0 237 84.0
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.0e-108 395.2 227 83.7
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.2e-107 393.7 223 83.9
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-107 393.3 230 83.0
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.3e-107 392.1 237 83.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.3e-107 392.1 237 81.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 4.4e-107 391.7 237 82.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 9.7e-107 390.6 235 83.0
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.3e-106 390.2 237 82.7
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-106 389.8 237 83.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.4e-105 386.7 237 81.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.4e-105 386.7 237 78.9
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 4.1e-105 385.2 235 81.7
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.1e-105 385.2 237 79.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 4.1e-105 385.2 237 80.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 7.0e-105 384.4 228 81.6
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 9.1e-105 384.0 237 81.0
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-104 383.6 275 74.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.0e-104 382.9 227 81.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.7e-104 382.5 236 80.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 3.5e-104 382.1 225 84.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.0e-103 380.6 236 82.6
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.3e-103 380.2 226 81.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-103 379.8 221 83.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.7e-103 379.8 227 84.1
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.9e-103 379.0 221 82.8
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.1e-102 377.1 235 80.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.5e-102 376.7 229 78.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.5e-102 376.7 213 85.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.9e-102 376.3 221 82.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 7.2e-102 374.4 214 86.0
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.6e-101 373.2 229 82.1
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.6e-101 373.2 210 84.3
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.7e-101 372.5 212 86.3
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-100 370.2 234 78.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-100 369.8 227 78.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.8e-100 369.8 240 76.7
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 4.0e-100 368.6 221 82.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 8.8e-100 367.5 219 82.6
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 8.8e-100 367.5 219 82.6
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.2e-99 367.1 212 84.0
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.5e-99 366.7 239 76.6
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.4e-99 365.5 213 85.9
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 4.4e-99 365.2 237 75.5
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.7e-99 364.8 241 75.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 9.8e-99 364.0 238 76.9
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.8e-98 362.5 237 78.9
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.8e-98 362.5 307 65.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 7.0e-97 357.8 226 78.3
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 5.9e-96 354.8 226 77.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.0e-95 354.0 223 74.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-95 353.6 227 78.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.9e-95 352.4 230 74.3
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.9e-95 352.4 191 89.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 6.6e-95 351.3 233 73.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 9.5e-94 347.4 237 75.1
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 8.0e-93 344.4 237 73.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 8.0e-93 344.4 237 73.8
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 8.9e-92 340.9 237 73.8
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.3e-90 337.0 225 74.2
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.0e-84 315.5 189 82.5
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 8.3e-82 307.8 237 65.4
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.1e-81 307.4 234 65.4
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-80 302.0 183 77.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 7.8e-80 301.2 218 67.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.3e-78 295.4 236 65.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.0e-77 291.2 209 71.3
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-76 290.0 191 72.3
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 6.8e-76 288.1 237 65.0
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.8e-76 288.1 243 63.0
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.2e-75 287.3 237 62.4
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.7e-74 282.3 237 66.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.4e-73 280.4 153 88.9
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.9e-73 280.0 183 77.6
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.6e-71 271.6 203 62.6
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.5e-67 260.4 226 58.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.4e-60 236.5 223 55.6
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-54 216.9 129 83.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 5.6e-54 215.3 135 82.2
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 5.6e-54 215.3 135 82.2
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 5.6e-54 215.3 135 82.2
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.6e-48 195.7 105 92.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.6e-45 186.0 206 54.9
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 6.2e-45 185.3 108 84.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.4e-41 174.1 111 75.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.7e-37 159.5 153 58.2
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-36 157.9 153 57.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-36 157.9 153 57.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-36 157.5 85 90.6
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 4.9e-34 149.1 194 42.3
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.5e-34 148.7 90 81.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.1e-29 133.7 73 87.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.1e-29 133.7 73 87.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 8.2e-29 131.7 72 87.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.9e-25 120.6 95 70.5
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.8e-23 114.0 68 79.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 5.3e-20 102.4 96 58.3
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.4e-19 99.8 60 76.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 7.7e-19 98.6 128 45.3
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.5e-17 92.4 67 68.7
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.5e-14 83.6 86 54.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.3e-13 81.3 59 66.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.4e-12 77.8 285 28.4
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.4e-12 77.8 58 70.7
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.0e-07 61.6 36 83.3
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.0e-06 57.4 37 64.9
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 5.7e-06 55.8 44 56.8


User provided reference genes

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