Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.1e-233 813.1 478 100.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.1e-201 706.8 477 81.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 9.8e-150 534.3 391 75.4
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.8e-135 486.9 411 63.0
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 5.8e-134 481.9 399 67.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 7.6e-126 454.9 416 63.2
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.7e-125 453.8 397 65.0
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.9e-125 452.2 426 60.6
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 5.4e-124 448.7 416 56.7
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 7.9e-123 444.9 424 55.2
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.9e-122 442.6 404 62.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.3e-121 439.5 391 57.8
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.3e-121 439.5 398 60.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.1e-119 433.0 398 57.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 5.8e-118 428.7 414 61.1
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 7.6e-118 428.3 396 55.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 9.9e-118 427.9 420 60.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 2.9e-117 426.4 407 62.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 8.4e-117 424.9 417 60.2
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.1e-116 424.5 413 62.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.3e-116 421.4 413 61.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.6e-115 420.6 396 60.4
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.3e-114 416.8 429 54.5
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.5e-113 413.3 405 59.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.6e-113 411.4 392 55.1
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.6e-112 410.6 388 58.0
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.1e-112 410.2 392 54.8
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.2e-112 408.7 388 55.2
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.1e-111 406.4 390 61.5
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 3.1e-111 406.4 393 60.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 6.9e-111 405.2 392 54.6
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.0e-111 404.8 413 54.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.6e-110 403.3 439 56.7
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.5e-110 402.5 429 55.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 5.8e-110 402.1 393 63.9
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.9e-108 397.1 414 51.7
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.9e-108 397.1 380 58.4
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.7e-107 393.3 392 56.9
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.0e-106 391.3 398 55.8
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.1e-104 383.6 397 57.9
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.2e-102 377.9 425 49.9
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 6.5e-101 372.1 403 56.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 8.5e-101 371.7 410 54.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.4e-100 370.9 411 55.2
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 4.2e-100 369.4 418 55.3
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.1e-99 367.1 403 56.3
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.7e-99 366.7 375 52.8
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.9e-98 362.8 415 54.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.7e-98 361.7 378 56.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-97 361.3 392 50.5
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.9e-97 360.5 397 53.1
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 2.2e-96 357.1 381 52.0
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.9e-95 352.1 409 52.1
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 3.4e-94 349.7 377 55.4
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 7.7e-94 348.6 397 52.4
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.7e-93 347.4 407 53.1
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.1e-92 344.7 368 48.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.2e-92 343.2 369 47.7
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.2e-92 343.2 404 51.5
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.1e-91 340.5 389 48.8
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.0e-90 338.2 411 52.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.5e-89 334.3 361 48.5
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.7e-89 331.6 409 50.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.7e-88 330.9 405 47.2
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.8e-87 327.4 406 50.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.8e-87 327.4 407 50.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.4e-87 327.0 400 50.0
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.7e-85 320.9 368 44.6
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 8.5e-85 318.5 381 52.5
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 9.4e-84 315.1 408 48.5
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.6e-83 314.3 401 51.6
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.9e-82 309.7 391 47.3
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.1e-75 287.3 407 45.2
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.3e-74 283.9 406 48.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.3e-74 283.9 412 41.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.0e-74 283.5 314 54.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.0e-74 283.5 426 42.0
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.3e-73 280.0 411 46.5
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.7e-72 277.7 390 42.3
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.9e-70 269.2 447 34.7
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.2e-69 267.3 339 45.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 6.5e-69 265.8 248 58.5
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.1e-63 246.9 389 38.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.0e-62 244.2 402 40.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 5.9e-62 242.7 349 39.5
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 6.5e-61 239.2 401 43.1
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 8.5e-61 238.8 319 43.6
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.2e-59 235.0 351 37.3
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.1e-59 234.2 383 44.4
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 6.8e-58 229.2 314 52.9
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.7e-56 223.4 203 57.1
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.4e-55 221.5 348 37.6
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 3.1e-55 220.3 235 49.4
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.5e-54 216.9 364 36.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 3.8e-53 213.4 319 49.5
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.9e-52 211.1 349 42.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 9.5e-52 208.8 386 34.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 6.8e-50 202.6 460 29.8
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.6e-49 200.7 189 56.1
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.8e-49 198.7 121 74.4
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 3.7e-48 196.8 147 63.9
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.5e-44 184.9 177 54.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.9e-44 184.5 254 49.2
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 4.3e-44 183.3 118 72.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.3e-40 169.1 134 61.9
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 6.0e-38 162.9 101 69.3
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.2e-35 155.2 86 86.0
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.4e-34 151.8 111 62.2
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.1e-34 150.6 102 59.8
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 6.8e-34 149.4 148 54.7
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.4e-33 147.1 95 62.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.4e-33 147.1 107 59.8
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.5e-33 146.0 100 65.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.9e-31 141.4 592 25.0
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.4e-31 141.0 145 51.7
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.1e-30 137.9 151 51.7
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.2e-27 128.6 94 61.7
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.7e-27 126.7 101 59.4
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.2e-26 123.2 95 61.1
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 4.4e-25 120.2 128 45.3
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.2e-24 117.9 90 54.4
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 6.0e-22 109.8 81 56.8
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.7e-21 108.2 83 61.4
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.3e-21 107.8 78 69.2
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 5.6e-20 103.2 78 66.7
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-19 101.3 100 52.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-19 100.9 81 51.9
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.7e-19 100.1 91 53.8
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.0e-18 97.1 81 46.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.4e-17 94.0 79 58.2
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-14 85.5 95 38.9
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 6.0e-14 83.2 85 43.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 2.3e-13 81.3 85 45.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.3e-12 76.3 75 49.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.6e-12 75.9 76 42.1
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-11 75.5 64 45.3
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.3e-11 75.5 54 70.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-11 73.9 69 47.8
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-11 73.9 69 47.8
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 8.1e-11 72.8 77 37.7
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-10 72.0 90 33.3
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 3.1e-10 70.9 45 71.1
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.5e-09 68.6 57 50.9
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.5e-09 67.0 47 61.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.6e-09 66.2 46 58.7
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.9e-09 65.9 115 28.7
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.9e-08 64.3 96 41.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 5.4e-07 60.1 63 58.7
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 7.1e-07 59.7 42 64.3
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 6.0e-06 56.6 35 62.9


User provided reference genes

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