Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 0.0e+00 1394.0 723 100.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 0.0e+00 1296.6 723 93.8
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 9.9e-312 1073.2 724 78.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 3.5e-308 1061.2 725 78.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 6.6e-291 1003.8 725 74.2
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.6e-281 971.5 728 71.8
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 2.3e-275 952.2 727 70.2
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.6e-274 947.6 724 69.9
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 9.0e-272 940.3 728 69.6
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 3.4e-271 938.3 725 69.4
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 4.9e-270 934.5 730 69.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 7.1e-269 930.6 725 69.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.7e-262 909.4 729 68.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.4e-261 906.4 725 67.3
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.3e-259 899.8 734 69.1
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 8.7e-259 897.1 727 66.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.1e-258 896.7 727 67.5
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 5.7e-258 894.4 730 67.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 9.7e-258 893.6 726 66.4
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.6e-257 892.9 733 67.8
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 6.3e-257 891.0 713 67.5
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.1e-256 888.6 729 66.5
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-255 885.9 725 65.9
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.6e-255 885.6 726 67.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.2e-254 882.5 729 66.4
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.0e-254 881.3 730 65.3
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 3.2e-253 878.6 728 65.9
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 9.4e-253 877.1 744 64.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.7e-252 875.5 725 65.7
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.6e-252 875.2 730 66.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.0e-251 873.6 727 66.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.0e-251 872.1 730 65.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.8e-251 870.5 727 66.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.2e-249 865.9 730 65.8
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.7e-249 865.1 722 65.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.8e-248 862.8 712 65.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.4e-248 862.4 727 65.9
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 5.3e-248 861.3 751 64.0
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-247 860.1 728 65.0
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.0e-246 857.1 713 66.8
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.0e-246 854.7 729 65.2
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.6e-244 849.7 726 64.3
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.9e-244 847.4 727 64.1
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 6.7e-243 844.3 713 65.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 6.7e-243 844.3 723 64.2
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 4.4e-242 841.6 713 64.5
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 9.7e-242 840.5 725 64.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.7e-241 838.6 724 63.7
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.1e-240 835.5 729 63.9
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 7.7e-239 830.9 735 63.4
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 7.7e-239 830.9 738 63.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 5.5e-237 824.7 738 62.1
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 2.1e-236 822.8 729 62.0
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 3.6e-236 822.0 734 63.1
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.4e-234 815.1 715 63.5
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 6.3e-233 811.2 736 62.5
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.1e-232 810.4 731 62.2
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.6e-231 806.6 727 61.8
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.5e-229 800.0 728 62.5
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.5e-229 799.3 728 60.7
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.1e-228 796.2 728 62.1
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 6.1e-228 794.7 731 62.7
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 6.1e-228 794.7 727 61.9
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 2.6e-226 789.3 742 60.0
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 9.8e-226 787.3 740 59.7
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.1e-224 783.9 729 61.9
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.4e-224 783.5 726 59.9
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.9e-222 775.8 733 62.3
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.1e-220 769.6 723 58.4
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.8e-220 769.2 728 60.0
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.8e-220 769.2 731 60.6
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 4.7e-220 768.5 729 59.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 8.0e-220 767.7 728 59.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.0e-219 767.3 726 58.4
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.0e-219 765.4 729 60.1
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.9e-217 758.4 723 59.9
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.4e-216 756.1 739 59.0
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 5.9e-215 751.5 724 57.9
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 5.9e-215 751.5 731 58.1
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 7.7e-215 751.1 730 59.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.7e-214 750.0 732 58.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.6e-214 747.7 728 58.2
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.5e-213 746.9 727 58.5
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 3.3e-213 745.7 728 59.5
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 5.6e-213 745.0 727 59.0
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 7.3e-213 744.6 727 58.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 4.7e-212 741.9 726 58.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 8.0e-212 741.1 728 57.3
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.0e-211 739.2 724 58.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 6.8e-211 738.0 727 58.6
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 6.8e-211 738.0 727 58.6
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.2e-210 737.3 738 57.9
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 4.4e-210 735.3 731 58.5
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 7.5e-210 734.6 731 58.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 8.3e-209 731.1 727 57.2
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 1.1e-208 730.7 727 58.7
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.4e-208 730.3 727 58.5
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.2e-207 727.2 728 58.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 5.9e-207 724.9 726 56.1
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.0e-203 714.1 728 57.0
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.0e-203 712.2 726 55.9
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.0e-203 712.2 728 56.7
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.6e-202 709.5 866 49.3
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 2.9e-201 706.1 743 57.1
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.3e-198 697.2 729 54.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 8.6e-198 694.5 733 57.2
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 8.9e-195 684.5 736 54.9
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.3e-193 680.6 662 60.0
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 6.4e-193 678.3 724 55.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.6e-191 672.2 731 54.9
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.0e-191 671.8 718 55.3
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.1e-189 667.5 737 54.3
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.1e-188 663.3 745 54.9
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 4.1e-184 649.0 621 60.9
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.4e-184 648.7 730 52.3
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.1e-184 648.3 736 52.4
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.6e-180 637.1 736 53.5
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.1e-179 634.4 728 53.3
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.7e-177 627.1 714 53.8
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 3.8e-177 625.9 731 52.7
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.9e-177 625.5 757 49.9
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.7e-175 619.8 714 52.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.9e-173 613.6 726 51.5
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 5.1e-158 562.4 740 50.4
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 8.2e-156 555.1 712 49.7
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.8e-155 553.9 395 74.4
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.9e-144 517.3 321 84.4
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.1e-143 512.3 390 71.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.7e-140 504.2 748 44.7
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 2.8e-140 503.4 562 54.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.9e-136 490.7 392 65.6
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.9e-136 490.7 392 65.6
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.0e-133 480.7 323 76.2
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 3.2e-120 436.8 390 60.0
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 4.4e-109 399.8 390 59.2
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 7.0e-107 392.5 509 47.3
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 8.3e-100 369.0 768 37.5
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-99 367.5 649 39.4
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.5e-98 363.6 750 37.2
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.0e-93 347.8 742 36.4
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 2.4e-91 340.9 813 34.9
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 6.0e-90 336.3 395 51.1
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 8.4e-68 262.7 349 48.1
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.1e-67 262.3 339 50.4
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-66 257.3 429 43.8
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.8e-63 247.7 351 46.2
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 5.4e-59 233.4 587 33.9
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-58 230.7 151 80.8
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-54 219.2 888 27.9
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.9e-43 181.8 181 56.4
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.6e-42 178.7 260 43.5
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 8.7e-41 172.9 152 54.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-40 172.6 245 42.4
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.6e-39 168.7 162 58.6
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 3.8e-28 131.0 402 27.1
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.2e-27 126.7 69 91.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 1.6e-26 125.6 69 89.9
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 7.9e-26 123.2 386 27.2
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-25 121.3 159 45.9
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.5e-21 107.5 57 94.7
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.9e-21 107.1 62 83.9
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 2.9e-20 104.8 403 26.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.6e-18 97.8 51 94.1
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-17 95.9 76 56.6
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 3.0e-17 94.7 51 92.2
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.7e-17 93.6 86 61.6
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.8e-17 93.2 86 60.5
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 5.7e-16 90.5 418 27.0
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 9.1e-14 83.2 101 50.5
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.5e-13 82.4 55 76.4
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.3e-09 68.6 59 57.6
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.0e-08 65.5 106 34.9


User provided reference genes

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