Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 0.0e+00 1301.6 651 100.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 0.0e+00 1176.4 651 92.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 0.0e+00 1100.1 654 85.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.3e-306 1055.8 654 83.0
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 4.1e-300 1034.2 661 80.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.9e-298 1027.7 658 80.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.1e-296 1021.9 662 79.3
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 6.2e-296 1020.4 653 79.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.1e-295 1019.6 658 79.2
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-295 1018.8 651 80.0
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.0e-295 1017.7 658 78.7
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.2e-294 1016.1 655 79.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.5e-294 1015.8 651 79.3
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 7.5e-294 1013.4 652 79.9
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 3.7e-293 1011.1 658 78.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.9e-293 1010.7 659 78.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.1e-292 1009.6 655 77.9
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.9e-292 1008.8 659 79.1
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.2e-292 1008.1 655 77.7
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 7.1e-292 1006.9 652 78.2
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 7.1e-292 1006.9 652 78.8
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 9.2e-292 1006.5 656 78.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-291 1006.1 657 77.8
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.7e-291 1005.0 656 77.4
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.6e-291 1004.2 661 78.1
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.0e-291 1003.8 656 77.3
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.0e-291 1003.8 656 77.7
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 613 82.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.7e-290 1002.3 651 79.1
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-290 1002.3 656 77.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.3e-290 1001.9 616 80.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.0e-290 1001.5 619 80.9
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.9e-290 1001.1 618 81.7
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 8.6e-290 1000.0 666 77.2
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.3e-289 998.0 652 77.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.3e-289 998.0 653 77.2
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 5.6e-289 997.3 619 79.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.1e-288 995.3 627 80.2
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 3.6e-288 994.6 652 77.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.7e-288 994.2 663 77.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 6.2e-288 993.8 651 78.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.1e-288 993.4 645 77.7
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 8.1e-288 993.4 617 80.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 8.1e-288 993.4 617 80.2
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.4e-287 992.6 653 77.0
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.8e-287 992.3 615 80.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.3e-287 991.9 594 82.3
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.3e-287 991.9 651 77.6
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.2e-287 990.7 651 78.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 5.2e-287 990.7 653 78.4
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 8.9e-287 989.9 651 78.5
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.2e-286 989.6 652 78.2
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 7.6e-286 986.9 651 77.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 9.9e-286 986.5 651 76.3
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.3e-285 986.1 618 80.4
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.7e-285 985.7 652 78.4
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.2e-285 985.3 651 78.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.9e-285 984.9 618 80.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.9e-285 984.9 616 81.0
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 6.4e-285 983.8 651 78.0
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.4e-285 983.8 605 80.7
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.1e-284 983.0 630 77.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.1e-284 983.0 602 80.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-284 982.6 602 80.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.9e-284 982.2 619 79.5
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 3.2e-284 981.5 652 77.6
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.2e-284 981.5 611 79.9
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.2e-284 981.5 613 80.4
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.2e-284 981.5 656 76.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 5.4e-284 980.7 609 80.6
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 5.4e-284 980.7 610 81.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.1e-284 980.3 651 76.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 7.1e-284 980.3 611 79.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 9.2e-284 979.9 651 77.6
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.1e-283 978.8 610 80.8
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.5e-283 978.0 651 76.8
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 6.0e-283 977.2 617 80.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 7.8e-283 976.9 654 76.9
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.0e-282 976.5 649 76.0
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.3e-282 976.1 657 77.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.3e-282 976.1 657 77.2
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.3e-282 975.3 653 76.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-282 975.3 651 77.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-282 975.3 657 77.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-282 975.3 657 77.0
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.3e-282 975.3 655 75.4
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-282 974.5 653 77.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.9e-282 974.5 653 77.3
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.9e-282 974.5 634 78.2
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 5.1e-282 974.2 651 77.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.3e-281 971.5 648 75.9
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.6e-280 969.1 630 77.5
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.6e-280 969.1 633 78.0
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.8e-280 968.4 638 78.4
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 6.2e-280 967.2 671 75.6
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.1e-279 966.5 651 76.7
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 6.8e-279 963.8 593 80.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 8.9e-279 963.4 651 76.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.2e-278 963.0 601 79.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.0e-278 962.2 622 78.0
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 5.8e-278 960.7 630 77.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.2e-277 958.7 644 76.7
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.2e-275 953.0 614 78.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.1e-275 952.2 684 72.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 7.8e-275 950.3 639 76.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.9e-274 948.0 674 72.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.5e-273 946.0 603 78.9
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.6e-273 944.1 562 83.3
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.1e-272 940.3 670 71.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 5.1e-266 921.0 621 73.6
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.6e-265 917.5 598 75.8
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.1e-263 913.3 619 73.7
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.5e-262 909.4 611 75.8
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.1e-260 900.6 599 78.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.6e-259 899.4 628 72.1
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.9e-258 894.8 620 73.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.0e-254 882.5 574 77.4
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.7e-253 879.4 612 74.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.5e-252 874.4 614 71.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-250 870.2 562 77.0
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 8.7e-250 867.1 661 69.1
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 6.1e-243 844.3 660 68.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.2e-236 822.0 655 68.1
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.3e-234 815.8 653 62.8
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.7e-229 799.7 592 65.9
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-225 786.6 521 78.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 7.7e-222 774.2 525 75.0
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.8e-221 771.9 525 74.5
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 4.7e-219 765.0 547 72.2
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 3.1e-215 752.3 587 63.9
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.9e-214 748.0 468 79.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.0e-210 735.7 461 80.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.8e-208 728.4 525 72.6
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.2e-203 713.8 468 75.9
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.8e-200 702.6 472 75.0
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.5e-196 689.5 631 56.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.7e-195 685.3 400 84.8
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 3.5e-174 615.9 468 69.9
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.3e-160 570.9 627 49.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.1e-159 567.8 343 84.0
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.5e-150 536.2 419 69.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.7e-133 478.4 344 75.0
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 4.7e-118 429.5 319 69.9
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-102 377.9 281 66.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.0e-96 356.3 220 80.0
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 5.2e-77 293.1 183 80.3
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.2e-75 287.7 208 70.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.6e-71 273.1 150 87.3
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 4.7e-70 270.0 591 31.6
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.9e-67 260.0 131 96.2
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 7.5e-60 236.1 133 82.0
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.7e-56 224.9 126 84.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 2.8e-54 217.6 122 91.0
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.6e-54 217.2 114 89.5
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 3.8e-51 207.2 182 63.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 3.2e-50 204.1 115 80.9
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.9e-47 194.9 115 82.6
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.5e-47 194.5 148 68.9
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.0e-45 186.0 105 81.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-43 181.0 145 64.8
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.3e-40 172.2 104 85.6
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.8e-38 164.5 120 70.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 9.0e-37 159.5 235 44.7
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.7e-35 155.2 119 71.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 2.5e-26 124.8 120 58.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 4.2e-26 124.0 61 93.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.1e-25 121.7 70 74.3
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.0e-24 119.4 216 36.6
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 3.7e-22 110.9 56 96.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 4.3e-15 87.4 67 59.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 9.7e-15 86.3 120 37.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.9e-13 80.1 69 55.1
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.5e-07 62.4 102 41.2


User provided reference genes

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