Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-100 370.2 207 100.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.6e-91 339.0 196 95.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.1e-76 288.5 196 83.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 5.3e-76 288.1 202 71.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.8e-68 263.1 195 67.2
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.1e-68 261.9 198 65.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.2e-67 260.4 195 71.8
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 7.7e-67 257.7 196 64.8
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.0e-66 257.3 196 63.8
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-66 256.9 195 66.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.9e-66 255.8 206 60.2
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.5e-65 253.4 197 64.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.9e-65 253.1 206 59.7
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.5e-65 252.7 197 63.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.2e-65 252.3 206 60.2
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 5.5e-65 251.5 202 61.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 9.4e-65 250.8 197 65.0
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 9.4e-65 250.8 195 64.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.4e-65 250.8 195 64.1
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-64 250.0 195 64.1
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.1e-64 248.1 200 61.5
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.0e-63 247.3 195 64.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-63 247.3 195 64.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.0e-63 247.3 207 59.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.8e-63 246.5 195 63.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.0e-63 245.4 196 61.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.5e-62 243.4 196 63.8
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.5e-62 243.4 196 61.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 5.7e-62 241.5 196 62.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.7e-62 241.5 198 59.6
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.1e-60 235.3 196 59.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.1e-60 235.3 203 59.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 7.0e-60 234.6 191 59.2
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 9.1e-60 234.2 200 59.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.6e-59 233.4 196 68.4
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.0e-58 230.7 195 58.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.0e-58 230.7 196 58.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.8e-58 228.8 137 73.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.8e-58 228.8 193 60.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.5e-57 226.9 195 57.4
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.2e-57 225.7 203 54.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.2e-57 225.7 201 55.2
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 4.2e-57 225.3 223 51.1
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 9.4e-57 224.2 196 58.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.7e-56 222.6 196 66.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.6e-56 222.2 206 57.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 8.0e-56 221.1 192 58.3
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 4.0e-55 218.8 136 72.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.8e-55 217.6 131 74.8
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-54 216.9 195 54.9
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-54 216.5 195 55.4
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-54 216.1 130 75.4
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 7.5e-54 214.5 131 73.3
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.8e-54 214.2 195 55.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 9.8e-54 214.2 124 77.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.3e-53 213.8 131 75.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.7e-53 213.4 119 80.7
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.2e-53 213.0 134 70.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.2e-53 213.0 130 72.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.8e-53 212.6 196 61.7
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.8e-53 212.6 196 55.6
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.8e-53 211.8 195 55.4
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 6.3e-53 211.5 129 73.6
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-52 210.3 195 53.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-52 210.3 195 54.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-52 210.3 195 54.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-52 209.1 195 53.3
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-51 206.8 195 53.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.6e-51 206.8 195 51.8
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.6e-51 206.8 195 51.8
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.9e-51 204.9 130 70.0
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.0e-50 204.1 195 52.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.0e-50 204.1 121 80.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.0e-50 201.8 179 54.7
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 5.0e-50 201.8 114 77.2
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.3e-49 199.1 113 77.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.2e-49 198.7 183 54.1
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 5.5e-49 198.4 179 53.1
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.5e-49 198.4 181 54.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.5e-49 198.4 181 54.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.5e-49 198.4 181 54.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.5e-49 198.4 181 54.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 7.2e-49 198.0 195 53.8
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.8e-48 196.1 191 50.8
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.8e-48 196.1 181 53.6
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.8e-48 196.1 181 53.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.8e-48 196.1 195 52.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.6e-48 195.7 195 51.8
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.4e-47 193.7 204 49.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.3e-47 193.0 191 54.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.3e-47 193.0 125 67.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 6.8e-47 191.4 130 65.4
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-46 190.3 114 73.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.5e-46 190.3 195 53.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.0e-46 189.9 195 53.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.6e-46 189.5 129 68.2
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.6e-46 189.5 195 48.2
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.4e-46 189.1 191 51.3
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 4.4e-46 188.7 189 51.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 7.5e-46 188.0 195 49.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 9.8e-46 187.6 181 51.9
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.7e-45 186.8 136 64.7
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.7e-45 185.7 181 51.9
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.9e-45 185.3 125 68.8
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 8.3e-45 184.5 191 49.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 8.3e-45 184.5 191 49.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 8.3e-45 184.5 191 49.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.4e-44 183.7 137 62.0
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.8e-44 183.3 130 66.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.4e-44 183.0 125 65.6
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.4e-44 183.0 192 49.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 3.1e-44 182.6 191 49.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.1e-44 182.2 192 49.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 7.0e-44 181.4 124 66.1
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 7.0e-44 181.4 131 63.4
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 9.2e-44 181.0 201 47.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.6e-43 180.3 195 51.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.6e-43 180.3 135 61.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.8e-42 175.6 197 45.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.1e-41 174.1 120 65.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.5e-41 172.9 189 47.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.3e-41 172.2 135 61.5
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 7.3e-41 171.4 127 61.4
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.5e-41 171.0 114 68.4
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.5e-41 171.0 114 67.5
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.8e-39 166.8 124 62.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.8e-39 166.8 123 60.2
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.8e-39 166.8 187 48.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-39 166.8 114 64.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-39 166.4 205 46.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.0e-39 165.6 120 60.8
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-38 163.7 120 60.0
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-37 160.6 120 59.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.4e-37 158.3 121 60.3
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.4e-36 156.4 136 56.6
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.4e-36 156.4 120 56.7
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.5e-35 152.5 122 54.1
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.5e-35 152.5 125 57.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.0e-35 151.8 127 57.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-34 150.6 109 61.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.5e-33 147.1 114 57.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 9.5e-33 144.4 116 56.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.8e-32 142.9 195 39.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.6e-32 142.5 123 52.0
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-31 140.2 103 59.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.3e-31 139.8 110 64.5
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 3.7e-29 132.5 109 58.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.2e-28 129.4 95 60.0
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 9.2e-28 127.9 111 53.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 6.0e-27 125.2 120 50.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-26 123.6 89 62.9
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.9e-26 122.5 96 59.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 6.6e-26 121.7 124 48.4
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 6.6e-26 121.7 112 50.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.3e-25 119.4 84 59.5
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.6e-25 118.6 120 45.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 7.3e-25 118.2 118 45.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-23 114.4 121 50.4
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-23 114.0 121 46.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-23 114.0 121 46.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.2e-23 112.1 107 51.4
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.4e-22 109.4 121 43.8
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-22 109.0 77 59.7
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.9e-20 103.6 57 78.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.6e-19 100.5 127 46.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-19 100.5 73 63.0
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-17 94.4 68 55.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.4e-15 86.7 109 37.6
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 4.2e-12 75.9 111 37.8
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-11 73.9 42 71.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 2.7e-11 73.2 44 72.7
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 3.0e-10 69.7 72 44.4


User provided reference genes

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