Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.7e-171 605.9 302 100.0
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 7.3e-159 563.9 303 94.1
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 4.5e-140 501.5 316 76.3
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 7.9e-137 490.7 316 75.0
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 7.9e-137 490.7 316 75.0
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 7.9e-137 490.7 316 75.0
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 5.5e-130 468.0 313 70.6
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 7.9e-129 464.2 313 69.6
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.0e-128 463.8 307 70.7
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 6.7e-128 461.1 299 73.2
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.7e-128 461.1 305 72.1
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.7e-128 461.1 305 72.1
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.5e-127 459.9 313 69.3
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 4.3e-127 458.4 319 68.0
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.7e-127 457.2 312 69.9
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.6e-124 449.1 307 70.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.4e-124 448.7 321 67.0
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 3.8e-123 445.3 300 71.7
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 5.0e-123 444.9 311 72.0
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.2e-122 442.2 319 65.5
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 7.2e-122 441.0 319 65.8
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 8.8e-120 434.1 310 68.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 4.3e-119 431.8 315 64.1
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 5.7e-119 431.4 303 68.6
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 7.4e-119 431.0 317 64.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 4.8e-118 428.3 311 65.6
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 4.8e-118 428.3 331 62.5
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 6.3e-118 427.9 303 67.0
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 4.1e-117 425.2 321 63.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.3e-117 424.9 310 65.5
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 9.1e-117 424.1 321 63.2
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.2e-116 423.7 306 65.4
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.2e-116 423.7 321 63.6
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.0e-115 420.6 236 78.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.2e-115 419.5 313 65.2
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.2e-115 419.5 321 65.1
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.9e-115 419.1 298 67.4
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 5.0e-115 418.3 319 64.3
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 6.5e-115 417.9 313 62.9
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.9e-114 416.4 303 69.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 2.5e-114 416.0 310 67.7
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 7.2e-114 414.5 327 62.7
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 7.2e-114 414.5 307 65.8
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 9.4e-114 414.1 297 68.0
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 6.1e-113 411.4 307 66.8
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 7.9e-113 411.0 299 65.9
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 7.9e-113 411.0 302 65.6
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.4e-112 410.2 297 67.0
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.4e-112 410.2 316 67.7
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.8e-112 409.8 302 63.2
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 3.9e-112 408.7 318 64.5
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 3.9e-112 408.7 296 67.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 5.1e-112 408.3 297 67.3
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 6.7e-112 407.9 309 65.4
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 8.8e-112 407.5 297 67.0
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 8.8e-112 407.5 307 63.5
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.1e-111 407.1 316 61.1
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-111 406.8 293 65.9
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 3.3e-111 405.6 237 78.9
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 4.4e-111 405.2 241 73.4
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 7.4e-111 404.4 297 64.6
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.3e-110 403.7 310 63.9
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 2.2e-110 402.9 309 63.8
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.7e-110 402.1 310 62.9
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 3.7e-110 402.1 287 66.9
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 3.7e-110 402.1 289 66.8
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-109 399.8 237 74.7
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 3.1e-109 399.1 316 62.0
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.3e-109 398.3 328 59.8
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 5.3e-109 398.3 300 64.0
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 9.1e-109 397.5 298 64.4
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.2e-108 397.1 298 64.4
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.6e-108 396.0 235 76.6
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.5e-108 395.6 299 62.2
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 4.5e-108 395.2 290 62.1
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.0e-107 394.0 311 60.8
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-107 394.0 301 63.1
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-107 394.0 301 63.1
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.0e-107 394.0 301 63.1
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.9e-107 392.5 292 64.7
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 6.5e-107 391.3 309 60.8
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 6.5e-107 391.3 305 61.6
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.5e-106 388.3 328 58.2
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 9.4e-106 387.5 306 59.8
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.6e-105 386.7 219 81.3
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 3.6e-105 385.6 243 69.1
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 4.7e-105 385.2 229 75.1
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.8e-104 383.3 288 61.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 5.2e-104 381.7 232 77.6
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 5.2e-104 381.7 234 75.2
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 6.7e-104 381.3 279 64.5
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 6.7e-104 381.3 243 68.3
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 8.8e-104 380.9 251 68.5
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 8.2e-102 374.4 219 76.3
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 4.1e-101 372.1 240 70.0
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.1e-101 372.1 302 58.9
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 9.1e-101 370.9 232 72.8
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.0e-99 367.5 246 67.1
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 3.8e-99 365.5 237 69.6
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.5e-99 364.8 298 59.4
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.9e-98 363.2 294 59.5
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 4.2e-98 362.1 302 58.3
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 4.2e-98 362.1 301 58.1
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 1.2e-97 360.5 232 71.1
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 1.6e-97 360.1 196 83.2
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 2.1e-97 359.8 301 58.1
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.8e-96 356.7 298 57.0
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.7e-94 350.1 301 54.8
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.7e-94 350.1 202 76.7
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 4.8e-94 348.6 292 57.5
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-93 347.1 293 56.7
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 4.1e-93 345.5 233 64.4
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 4.1e-93 345.5 210 74.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 5.4e-93 345.1 233 65.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 9.1e-93 344.4 251 64.5
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 3.5e-92 342.4 222 68.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 7.7e-92 341.3 293 56.0
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.3e-91 340.5 235 65.1
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 5.0e-91 338.6 247 61.1
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 5.0e-91 338.6 247 61.5
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 8.5e-91 337.8 223 68.2
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 9.4e-90 334.3 232 64.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 9.4e-90 334.3 297 58.6
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 9.4e-90 334.3 235 63.8
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 6.1e-89 331.6 295 54.2
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.0e-88 328.9 302 52.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.0e-88 328.9 237 62.0
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 6.8e-88 328.2 197 76.6
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-86 323.2 297 57.6
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.2e-86 323.2 297 57.6
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.2e-86 323.2 297 57.6
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.2e-86 323.2 297 57.2
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 6.3e-86 321.6 297 57.2
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 1.4e-85 320.5 310 51.6
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-85 320.1 297 56.9
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.5e-84 315.5 232 57.8
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.2e-81 307.4 226 61.5
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.7e-81 305.4 237 62.4
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.8e-80 303.5 236 59.3
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.6e-79 299.7 301 52.8
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 5.0e-75 285.4 190 70.5
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.5e-74 283.1 221 59.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-73 280.0 199 67.3
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 8.0e-73 278.1 230 53.9
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.6e-71 273.1 286 52.8
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.4e-71 272.7 304 48.4
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 3.4e-71 272.7 249 52.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 5.4e-69 265.4 229 52.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.2e-68 264.2 253 51.8
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 4.6e-68 262.3 217 56.2
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.7e-67 260.4 225 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.1e-66 257.7 230 52.2
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.5e-66 257.3 172 75.0
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.3e-66 255.8 228 50.9
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 4.3e-66 255.8 243 50.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 8.1e-65 251.5 230 50.9
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.8e-64 248.4 224 51.3
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.1e-60 236.9 224 49.6
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.3e-58 229.2 232 47.8
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 7.3e-58 228.4 244 44.7
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.2e-57 227.6 154 63.0
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.6e-57 227.3 151 73.5
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 5.8e-55 218.8 196 52.6
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.2e-54 216.9 262 43.9
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 3.2e-53 213.0 191 50.8
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.1e-53 212.6 129 72.1
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 8.6e-51 204.9 223 47.5
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 3.3e-50 203.0 317 35.3
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 8.1e-49 198.4 221 43.9
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.1e-48 198.0 152 60.5
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 8.7e-43 178.3 109 72.5
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.9e-35 152.9 95 67.4
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-33 147.9 87 73.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 5.1e-27 125.9 92 64.1
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.9e-15 85.9 60 66.7
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 6.5e-14 82.4 79 45.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-10 71.2 94 41.5
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 7.7e-07 58.9 41 63.4


User provided reference genes

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