Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 4.8e-185 651.0 317 100.0
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 1.4e-176 622.9 326 94.2
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 1.3e-145 520.0 292 86.0
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.8e-145 518.8 334 79.6
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 6.4e-129 464.5 318 73.0
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 1.2e-127 460.3 318 73.0
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 5.0e-126 454.9 334 68.9
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 1.8e-123 446.4 257 82.1
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.5e-122 443.4 318 69.2
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 2.9e-121 439.1 320 69.4
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 9.2e-120 434.1 316 68.0
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 2.0e-119 433.0 315 70.8
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 3.9e-118 428.7 316 69.3
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 3.9e-118 428.7 325 68.0
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 3.9e-118 428.7 331 65.0
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 8.6e-118 427.6 307 70.0
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 1.5e-117 426.8 293 72.0
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 3.3e-117 425.6 331 63.7
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.3e-117 425.6 331 63.7
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 8.1e-116 421.0 330 63.9
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 1.2e-114 417.2 294 68.7
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 1.3e-113 413.7 324 64.2
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.9e-113 412.5 312 67.6
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 3.7e-113 412.1 324 63.0
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 6.4e-113 411.4 307 66.1
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 1.1e-112 410.6 318 63.8
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 3.2e-112 409.1 321 66.0
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 3.2e-112 409.1 326 63.2
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 7.1e-112 407.9 314 63.1
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.2e-111 407.1 373 57.1
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 3.5e-111 405.6 324 62.3
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 3.5e-111 405.6 329 61.7
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 7.8e-111 404.4 327 60.2
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.8e-111 404.4 366 57.9
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 7.8e-111 404.4 323 63.8
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.3e-110 403.7 316 63.9
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 3.9e-110 402.1 259 74.5
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 5.1e-110 401.7 323 64.1
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 5.1e-110 401.7 343 59.8
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 1.1e-109 400.6 312 62.8
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 1.9e-109 399.8 317 61.2
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 3.3e-109 399.1 259 70.7
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 4.7e-108 395.2 277 66.4
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 8.1e-108 394.4 328 62.2
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.4e-107 393.7 286 65.0
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 1.8e-107 393.3 310 62.3
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 1.8e-107 393.3 305 63.3
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 3.1e-107 392.5 317 60.3
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 5.2e-107 391.7 372 55.1
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 8.9e-107 391.0 318 60.7
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 8.9e-107 391.0 314 62.4
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 5.8e-106 388.3 306 63.7
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 7.6e-106 387.9 312 63.8
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 2.2e-105 386.3 290 66.2
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 2.2e-105 386.3 313 62.0
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 6.4e-105 384.8 286 63.6
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 8.4e-105 384.4 286 64.0
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 3.2e-104 382.5 286 63.6
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 5.4e-104 381.7 316 61.4
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 7.1e-104 381.3 305 62.6
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 7.1e-104 381.3 288 64.6
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 7.1e-104 381.3 306 62.7
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 7.1e-104 381.3 362 56.1
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 2.1e-103 379.8 269 64.7
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 6.0e-103 378.3 269 65.1
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 7.8e-103 377.9 261 67.0
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.3e-102 377.1 274 63.9
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.3e-102 376.3 328 57.6
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 3.9e-102 375.6 261 66.3
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 1.1e-101 374.0 269 64.3
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.5e-101 372.9 259 68.0
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 3.3e-101 372.5 259 68.0
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.2e-100 370.5 285 62.1
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 1.8e-99 366.7 332 58.1
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 4.0e-99 365.5 340 55.6
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 4.0e-99 365.5 321 59.2
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 8.9e-99 364.4 253 68.8
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 1.5e-98 363.6 320 60.3
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 3.4e-98 362.5 309 58.6
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 7.6e-98 361.3 246 72.4
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 3.8e-97 359.0 282 61.3
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 2.4e-96 356.3 301 61.5
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 9.3e-96 354.4 246 70.3
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 2.5e-93 346.3 246 67.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 5.6e-93 345.1 311 56.3
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.7e-89 333.6 310 55.8
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 1.1e-83 314.3 261 56.7
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 3.1e-83 312.8 257 56.0
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 4.5e-82 308.9 266 54.5
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 9.9e-82 307.8 208 68.3
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 1.3e-81 307.4 246 61.0
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.8e-81 305.8 207 67.6
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 1.4e-80 303.9 261 55.6
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 1.9e-80 303.5 298 49.3
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 4.3e-77 292.4 178 77.0
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 1.0e-73 281.2 266 50.8
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 4.6e-71 272.3 265 51.7
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.5e-69 267.3 214 62.1
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 5.7e-69 265.4 353 45.0
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 9.0e-67 258.1 261 51.0
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 9.1e-59 231.5 137 75.9
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.4e-56 224.2 151 66.2
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 8.5e-49 198.4 157 61.8
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 7.2e-48 195.3 178 57.9
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 5.7e-45 185.7 165 58.2
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 7.4e-45 185.3 150 64.0
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.3e-38 163.7 157 56.1
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 5.2e-38 162.5 162 55.6
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.4e-35 154.5 112 66.1
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 1.6e-34 151.0 286 34.3
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.6e-31 141.0 85 75.3
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 2.8e-28 130.2 149 47.0
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 8.6e-25 118.6 121 49.6
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 4.4e-21 106.3 62 80.6
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 8.3e-20 102.1 62 74.2
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.2e-18 98.2 66 75.8
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 8.6e-17 92.0 214 27.1
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 8.6e-17 92.0 207 28.0
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 8.6e-17 92.0 217 27.2
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.1e-16 91.7 214 26.6
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 1.9e-16 90.9 203 27.6
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 2.5e-16 90.5 217 29.5
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 3.3e-16 90.1 214 26.6
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 5.6e-16 89.4 206 26.7
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 5.6e-16 89.4 209 27.8
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 5.6e-16 89.4 218 28.0
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 5.6e-16 89.4 205 27.3
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.2e-15 88.2 203 26.6
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 1.2e-15 88.2 209 27.3
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 1.6e-15 87.8 216 26.9
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.6e-15 87.8 203 27.1
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 1.6e-15 87.8 212 26.9
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 1.6e-15 87.8 217 27.2
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 2.1e-15 87.4 213 26.8
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.8e-15 87.0 212 26.4
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 2.8e-15 87.0 216 25.5
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 2.8e-15 87.0 216 25.5
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 3.6e-15 86.7 214 27.6
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 4.7e-15 86.3 205 28.3
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 4.7e-15 86.3 203 28.6
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 4.7e-15 86.3 212 25.9
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 6.1e-15 85.9 219 26.5
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 6.1e-15 85.9 213 27.2
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 8.0e-15 85.5 209 26.8
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 8.0e-15 85.5 226 26.1
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 8.0e-15 85.5 203 27.1
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.0e-14 85.1 59 67.8
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.0e-14 85.1 203 27.6
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 1.0e-14 85.1 212 26.4
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.4e-14 84.7 203 26.6
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 1.4e-14 84.7 203 27.6
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 1.4e-14 84.7 211 26.5
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 1.4e-14 84.7 214 27.1
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.4e-14 84.7 216 26.9
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 2.3e-14 84.0 214 26.2
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 3.0e-14 83.6 214 27.1
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 3.0e-14 83.6 214 27.1
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 3.0e-14 83.6 203 27.1
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 3.0e-14 83.6 203 26.6
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 4.0e-14 83.2 204 27.0
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 4.0e-14 83.2 203 28.6
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 4.0e-14 83.2 214 24.8
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 5.2e-14 82.8 212 26.4
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 6.8e-14 82.4 203 26.6
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.2e-13 81.6 203 27.1
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 1.5e-13 81.3 205 25.4
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 1.5e-13 81.3 203 26.6
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 2.0e-13 80.9 189 26.5
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 7.5e-13 79.0 210 26.2
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 7.5e-13 79.0 205 25.4
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 9.8e-13 78.6 194 24.2
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 9.8e-13 78.6 194 24.2
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 9.8e-13 78.6 203 26.1
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 1.7e-12 77.8 67 52.2
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 8.3e-12 75.5 247 25.1
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.1e-11 75.1 213 23.9
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 9.2e-11 72.0 204 27.9
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 9.2e-11 72.0 219 26.0
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 5.6e-08 62.8 60 55.0
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 8.9e-06 55.5 188 25.0


User provided reference genes

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