Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 0.0e+00 1211.4 625 100.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 0.0e+00 1143.3 625 95.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.8e-306 1053.9 614 89.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 5.0e-295 1017.3 626 84.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.5e-294 1013.8 625 83.5
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 8.0e-293 1010.0 626 83.9
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.4e-291 1004.6 592 87.3
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.8e-290 1001.5 618 82.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 3.7e-290 1001.1 617 83.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.1e-289 998.0 624 82.4
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 7.0e-289 996.9 630 81.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 7.0e-289 996.9 638 80.7
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.6e-288 995.7 624 81.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.7e-288 995.0 626 82.7
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 6.6e-287 990.3 625 81.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-285 986.1 625 81.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.8e-285 984.9 626 81.8
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.6e-283 978.4 626 80.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.4e-283 977.6 627 80.5
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.8e-283 976.5 627 81.0
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.1e-281 973.0 627 79.7
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.4e-281 972.6 625 80.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.0e-280 968.8 626 80.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.0e-280 968.8 627 79.9
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 3.5e-280 968.0 617 80.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.6e-280 967.6 616 80.4
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 5.9e-280 967.2 616 81.0
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 7.8e-280 966.8 617 80.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.0e-279 966.5 627 80.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.7e-279 965.7 624 80.3
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.9e-279 964.5 622 80.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.9e-278 962.2 627 78.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.5e-278 961.8 617 80.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.3e-278 961.4 626 79.1
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 5.6e-278 960.7 617 79.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-277 959.1 631 79.4
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 4.7e-277 957.6 646 78.8
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-276 956.4 642 78.3
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.1e-276 954.9 627 78.8
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 5.2e-276 954.1 629 79.2
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 5.2e-276 954.1 626 79.6
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.8e-275 950.7 619 79.2
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 4.9e-274 947.6 624 78.5
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.4e-273 946.0 674 74.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 4.1e-273 944.5 627 77.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 5.4e-273 944.1 620 78.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.4e-273 944.1 627 77.2
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.6e-272 942.6 627 79.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-271 939.1 625 77.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.0e-271 937.6 627 76.6
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 6.6e-271 937.2 627 77.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-270 936.0 626 78.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.3e-270 934.9 625 77.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 5.6e-270 934.1 627 76.7
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 5.6e-270 934.1 627 76.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 7.3e-270 933.7 627 76.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.6e-269 931.4 627 76.7
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.1e-268 929.9 618 78.0
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.3e-268 928.7 625 77.0
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.3e-268 928.7 707 70.9
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.2e-268 927.5 625 76.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.2e-268 927.5 625 76.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.2e-267 926.4 627 75.9
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.0e-267 925.6 626 76.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-265 919.5 625 78.4
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.2e-265 918.3 627 75.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.2e-264 916.4 624 75.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.2e-264 916.4 602 79.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.2e-264 916.4 624 75.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.7e-264 915.2 622 75.1
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.5e-264 914.8 624 75.6
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 6.0e-264 914.1 622 75.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.3e-263 912.9 622 75.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.3e-263 912.1 628 76.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.0e-263 911.8 627 75.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.9e-263 911.4 623 75.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.9e-263 911.4 683 70.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.1e-262 909.8 622 75.9
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 4.3e-262 907.9 620 76.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 5.6e-262 907.5 646 73.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 9.5e-262 906.7 622 74.8
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.6e-261 906.0 627 75.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.2e-261 904.0 623 74.5
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-260 902.9 622 74.3
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.3e-260 902.1 620 75.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.1e-260 901.7 622 74.1
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 8.9e-260 900.2 618 74.4
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-259 898.7 622 74.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.6e-259 898.7 622 74.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.6e-259 898.7 622 74.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.2e-258 895.6 626 74.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 6.4e-258 894.0 594 78.6
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.4e-257 892.1 577 79.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 9.2e-257 890.2 622 74.1
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.5e-256 888.3 625 72.5
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-255 884.8 594 78.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.9e-255 884.8 587 77.9
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.8e-252 875.9 619 75.6
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.4e-251 871.7 574 79.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 4.4e-251 871.3 624 72.6
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 4.4e-251 871.3 624 72.8
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-249 865.5 650 70.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 4.3e-246 854.7 572 76.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-242 842.4 610 73.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.6e-240 834.7 610 73.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.6e-237 826.2 638 68.5
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 7.6e-235 817.4 664 66.9
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.9e-230 802.7 681 62.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-230 802.4 624 68.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.3e-229 800.0 528 78.2
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.0e-228 795.0 503 81.9
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.5e-222 775.8 518 76.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.1e-220 768.8 622 64.5
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.5e-219 766.5 625 65.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.0e-218 763.8 501 77.6
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 7.4e-214 747.7 618 63.4
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.1e-200 703.0 571 67.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-193 679.9 451 76.5
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.7e-192 676.0 528 69.1
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.2e-189 666.4 466 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.6e-176 622.5 630 53.5
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.2e-166 590.9 624 51.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.1e-164 582.4 609 50.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 7.8e-155 551.6 460 63.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 6.2e-152 542.0 354 79.1
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.8e-144 516.5 391 70.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.4e-140 503.4 442 61.5
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.3e-138 496.9 629 45.3
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.0e-138 496.5 555 54.4
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 8.4e-133 478.4 596 45.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.3e-129 466.1 332 72.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-126 458.0 312 76.9
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.3e-117 427.9 248 84.3
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-113 414.8 280 78.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.3e-106 391.3 465 49.9
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.1e-100 371.7 318 65.1
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.7e-91 340.5 272 66.9
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.4e-74 285.0 181 80.1
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.4e-71 275.0 708 31.1
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.0e-66 258.8 573 32.3
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-63 248.4 153 79.1
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 6.6e-61 239.6 155 78.7
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-60 238.4 154 79.9
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-43 182.2 173 60.7
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.0e-43 179.5 144 68.8
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.1e-38 164.9 646 26.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-32 145.6 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-31 142.1 185 45.4
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.4e-31 140.2 74 93.2
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.9e-28 131.7 98 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.3e-28 130.6 144 47.9
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 5.2e-26 123.6 99 61.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.4e-23 113.6 66 80.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 8.7e-21 106.3 67 68.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.6e-19 102.1 78 61.5
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.9e-16 91.3 650 22.3
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.5e-14 84.3 71 54.9
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.3e-13 82.4 94 52.1
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.3e-13 82.4 194 33.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.9e-12 78.6 53 75.5
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 2.5e-12 78.2 73 58.9
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.5e-12 78.2 53 75.5
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 7.3e-12 76.6 61 67.2
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.6e-11 75.5 72 58.3
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.9e-08 63.9 54 61.1
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 2.1e-06 58.5 29 89.7


User provided reference genes

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