Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 0.0e+00 1174.1 660 100.0
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.7e-301 1038.9 660 89.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-273 946.4 660 83.2
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-273 946.4 660 83.2
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 7.0e-271 937.2 663 81.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 3.1e-263 911.8 663 80.4
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.1e-260 903.3 663 79.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 5.7e-257 891.0 661 76.4
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 4.8e-256 887.9 663 78.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.1e-255 885.2 663 77.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.6e-254 882.9 663 77.7
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.7e-254 882.1 661 75.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.7e-253 879.4 662 77.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.7e-253 879.4 663 76.0
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.2e-253 879.0 664 75.9
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 3.8e-253 878.2 664 74.1
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.9e-252 875.9 664 75.3
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.7e-251 871.3 661 74.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 6.8e-250 867.5 663 76.6
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-248 862.8 662 75.8
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.9e-248 861.3 667 74.8
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 4.9e-248 861.3 661 76.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 6.3e-248 860.9 667 74.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.3e-248 860.5 662 74.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 3.1e-247 858.6 661 73.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 5.4e-247 857.8 665 75.3
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-246 856.3 662 74.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 2.3e-245 852.4 664 74.4
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.7e-243 844.7 663 74.1
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.3e-242 842.4 668 75.3
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 5.7e-241 837.8 662 74.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.7e-240 835.1 664 73.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 8.3e-240 833.9 666 72.7
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.4e-239 832.4 666 71.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 7.8e-238 827.4 662 72.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.7e-237 826.2 663 75.7
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.6e-237 824.3 662 71.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.5e-236 822.4 662 69.9
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 7.3e-236 820.8 661 69.7
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.2e-235 817.8 662 71.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.0e-234 817.0 666 71.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-234 816.6 662 71.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 4.4e-233 811.6 662 71.0
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 9.8e-233 810.4 663 74.8
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.4e-231 806.6 640 72.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.4e-231 805.8 664 71.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.0e-231 804.3 662 71.3
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.6e-230 803.1 674 67.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.5e-228 795.8 677 72.8
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 3.3e-228 795.4 663 69.1
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.8e-226 789.6 663 67.7
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.0e-226 788.5 661 69.9
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.6e-217 759.2 666 68.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 9.9e-217 757.3 662 65.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.2e-216 756.1 662 67.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.9e-216 755.7 662 66.5
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.1e-215 753.8 662 67.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 9.2e-215 750.7 660 65.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 6.0e-214 748.0 670 64.5
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.3e-213 746.1 660 66.5
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.4e-210 736.9 662 66.8
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.5e-209 733.4 662 66.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.6e-209 732.6 663 63.3
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.4e-209 732.3 662 64.7
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 4.4e-209 731.9 659 65.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.2e-207 725.7 665 63.8
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 5.4e-207 724.9 669 64.9
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.1e-207 724.5 661 64.3
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 6.0e-206 721.5 661 67.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.3e-205 720.3 677 65.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.3e-205 719.5 660 63.0
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.0e-205 719.2 663 65.3
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 3.9e-205 718.8 665 64.7
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 8.7e-205 717.6 665 62.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 4.3e-204 715.3 672 63.1
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-204 715.3 665 62.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.3e-204 715.3 676 64.9
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 5.6e-204 714.9 662 64.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 7.3e-204 714.5 662 64.7
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 9.6e-204 714.1 662 64.5
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.1e-203 713.0 661 66.4
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.6e-203 712.2 662 66.3
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.1e-203 711.1 665 62.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 3.1e-202 709.1 615 65.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 5.3e-202 708.4 668 62.9
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 9.0e-202 707.6 665 62.6
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 9.0e-202 707.6 665 62.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 9.0e-202 707.6 665 67.4
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-201 707.2 665 62.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.5e-201 706.8 660 64.1
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-200 702.6 610 68.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.2e-199 699.1 665 64.1
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.7e-198 696.0 664 65.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.6e-198 695.3 663 63.5
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 6.0e-198 694.9 669 64.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.0e-198 694.9 663 63.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-197 693.7 678 60.8
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.5e-196 689.5 667 63.3
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.6e-195 686.8 670 61.6
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-195 686.4 547 73.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-195 686.4 547 73.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.2e-195 684.9 663 64.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 8.1e-195 684.5 665 61.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.1e-194 684.1 667 63.3
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.2e-192 676.4 657 61.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.9e-192 675.2 543 71.5
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.9e-191 673.3 663 65.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-191 672.9 664 59.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 3.2e-191 672.5 668 62.9
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.3e-188 662.5 667 60.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 4.3e-188 662.1 661 60.7
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 9.6e-188 661.0 660 58.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 6.9e-186 654.8 656 59.1
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.4e-185 652.5 667 59.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.1e-183 647.5 669 57.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.4e-183 647.1 664 62.5
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.6e-182 643.7 662 58.3
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.1e-182 643.3 666 58.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.5e-180 637.1 663 62.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 5.7e-180 635.2 668 56.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.7e-180 634.4 663 56.6
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.3e-179 634.0 683 58.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.8e-179 632.9 663 60.2
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.8e-178 630.2 664 56.8
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.5e-177 625.5 673 59.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.9e-176 622.9 671 55.3
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.5e-176 621.7 671 55.4
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-175 620.5 671 58.3
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.2e-175 619.4 570 64.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.0e-173 614.4 673 54.7
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.1e-170 602.8 656 55.3
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 8.8e-165 584.7 666 56.0
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.4e-164 582.4 655 59.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-159 567.8 684 53.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.2e-159 565.8 666 50.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.1e-158 563.5 686 51.9
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.7e-158 563.1 649 56.9
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-158 562.8 660 52.4
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 6.1e-158 562.0 682 52.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 3.0e-157 559.7 685 52.1
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.6e-153 546.6 666 52.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.9e-152 543.1 666 52.4
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 5.0e-152 542.3 678 52.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.1e-151 541.2 631 54.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 3.0e-149 533.1 662 52.3
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.4e-146 523.5 661 51.3
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.7e-142 510.0 552 56.5
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 5.7e-140 502.3 400 72.5
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.7e-128 464.2 405 71.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.8e-128 463.0 408 67.6
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 4.7e-126 456.1 619 48.8
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.9e-123 446.8 431 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 6.4e-123 445.7 670 45.1
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.3e-123 445.3 681 48.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-119 434.9 665 46.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.2e-91 340.9 675 39.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.4e-90 338.2 544 43.6
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.9e-87 327.8 235 76.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.3e-87 326.6 554 43.5
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.9e-83 313.9 311 57.9
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 9.3e-74 282.3 655 38.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.6e-70 271.6 585 37.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 4.3e-63 246.9 638 34.2
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 3.3e-55 220.7 262 47.3
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-43 182.2 224 53.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-36 158.7 113 68.1
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.2e-30 138.3 77 88.3
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 2.9e-27 127.9 126 62.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 6.5e-27 126.7 164 50.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 8.0e-25 119.8 90 67.8
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.2e-24 117.1 106 55.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.3e-19 101.7 74 68.9
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.0e-19 100.5 78 71.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 8.6e-19 99.8 391 25.3
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.5e-18 97.1 61 75.4
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 2.6e-15 88.2 472 24.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 3.1e-13 81.3 60 68.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 8.0e-09 66.6 407 24.8
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 3.1e-08 64.7 141 43.3
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.2e-07 62.8 104 46.2
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.2e-07 62.8 79 49.4
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 2.6e-07 61.6 83 65.1
Actinidia01898 Actinidia chinensis HOM05D003743 ORTHO05D004311 9.8e-07 59.7 142 35.9


User provided reference genes

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