Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 4.3e-127 458.0 229 100.0
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.1e-119 433.3 224 91.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.2e-60 237.3 233 58.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.0e-60 236.5 255 52.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.7e-60 236.1 248 56.0
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.7e-59 233.4 242 53.7
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 2.2e-59 233.0 273 51.3
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.5e-59 231.5 266 53.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.9e-58 229.9 249 50.6
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 4.7e-57 225.3 255 49.4
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 5.2e-56 221.9 251 50.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 5.7e-55 218.4 195 59.5
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.4e-53 213.8 267 46.8
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 9.1e-53 211.1 242 47.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 9.1e-53 211.1 217 54.4
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.5e-52 209.1 208 54.3
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.7e-51 206.8 247 46.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 5.0e-51 205.3 245 46.1
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 9.5e-50 201.1 244 49.2
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.3e-48 196.4 235 46.0
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 5.2e-48 195.3 148 61.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 6.8e-48 194.9 194 50.5
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-47 194.1 182 51.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 6.3e-46 188.3 229 46.3
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 9.2e-45 184.5 252 47.6
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 5.9e-44 181.8 216 46.3
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 5.9e-44 181.8 226 48.2
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 8.6e-43 177.9 219 45.7
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.6e-42 175.3 231 44.6
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.8e-41 172.9 110 70.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.8e-40 170.2 233 42.9
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.1e-40 169.5 212 43.4
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.1e-40 169.5 222 45.9
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.1e-40 169.5 154 53.2
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.2e-39 167.5 154 59.1
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 5.8e-39 165.2 210 45.2
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.3e-38 164.1 213 43.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 2.2e-38 163.3 207 43.5
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.9e-38 162.9 218 45.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.9e-38 162.9 217 45.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.9e-38 162.9 217 45.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.7e-38 162.5 103 67.0
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.2e-36 157.5 214 42.5
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.6e-36 157.1 220 42.3
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 4.6e-36 155.6 217 44.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.0e-36 155.2 238 39.5
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 1.0e-35 154.5 156 56.4
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 5.0e-35 152.1 237 38.4
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 3.1e-32 142.9 205 36.6
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.4e-31 139.4 192 43.2
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 9.2e-29 131.3 100 57.0
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 3.5e-28 129.4 240 36.2
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.3e-27 126.7 236 38.6
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 5.1e-27 125.6 235 35.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.5e-26 124.0 252 36.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 4.3e-26 122.5 147 42.9
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 4.7e-25 119.0 144 41.7
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.7e-22 110.5 143 38.5
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 5.4e-21 105.5 153 37.9
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 7.1e-21 105.1 173 41.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 6.0e-20 102.1 142 36.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.0e-19 99.8 143 38.5
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 3.0e-19 99.8 141 39.0
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.9e-19 99.4 164 32.3
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.1e-19 99.0 150 34.7
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-18 97.8 150 34.0
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.5e-18 97.4 141 35.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.9e-18 97.1 142 33.1
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-18 96.3 142 35.9
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 5.6e-18 95.5 165 41.2
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 7.3e-18 95.1 141 35.5
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-17 93.2 81 54.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-17 93.2 81 54.3
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 3.6e-17 92.8 148 34.5
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 4.7e-17 92.4 133 34.6
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 8.1e-17 91.7 133 34.6
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.1e-16 91.3 155 32.9
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.4e-16 90.9 140 35.0
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.4e-16 90.9 171 32.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.4e-16 90.1 134 35.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.4e-16 90.1 150 31.3
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-16 90.1 140 33.6
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 6.8e-16 88.6 133 33.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 8.9e-16 88.2 141 33.3
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.5e-15 87.4 146 30.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.6e-15 86.7 160 30.6
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 5.8e-15 85.5 162 32.7
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 7.6e-15 85.1 143 33.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-14 84.3 129 34.9
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.3e-14 84.3 139 33.1
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.9e-13 80.5 187 29.4
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 3.2e-13 79.7 124 33.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 4.2e-13 79.3 142 32.4
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.2e-13 79.3 139 32.4
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.4e-13 79.0 94 41.5
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 5.4e-13 79.0 142 33.1
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.1e-13 78.6 142 33.8
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 7.1e-13 78.6 92 35.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 9.3e-13 78.2 124 33.9
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.2e-12 77.8 142 32.4
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.2e-12 77.8 142 32.4
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.1e-12 77.0 140 31.4
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.7e-12 76.6 95 35.8
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.5e-12 76.3 102 39.2
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.5e-12 76.3 102 39.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 3.5e-12 76.3 151 28.5
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.5e-12 76.3 147 27.2
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.6e-12 75.9 147 27.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 6.0e-12 75.5 142 30.3
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 7.8e-12 75.1 148 30.4
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 8.7e-11 71.6 142 31.7
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.5e-10 70.9 95 34.7
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 7.3e-10 68.6 124 31.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 9.6e-10 68.2 146 30.8
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-09 67.8 147 30.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.3e-09 67.8 143 33.6
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 2.8e-09 66.6 144 28.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.6e-09 66.2 145 26.9
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 6.2e-09 65.5 40 60.0
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.8e-08 63.9 33 75.8
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 2.4e-08 63.5 145 27.6
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.1e-08 63.2 133 33.1
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 4.0e-08 62.8 145 26.9
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 5.3e-08 62.4 119 33.6
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-08 62.4 57 47.4
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-08 62.4 63 46.0
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 5.3e-08 62.4 58 46.6
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.2e-07 61.2 135 33.3
Solyc05g014720.4 Solanum lycopersicum HOM05D002182 ORTHO05D004671 2.6e-07 60.1 103 35.0
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 3.4e-07 59.7 98 36.7
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 3.4e-07 59.7 116 33.6
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.4e-07 59.3 96 34.4
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 4.4e-07 59.3 89 34.8
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 5.8e-07 58.9 107 31.8
SGA_v2.0_scaffold199G41207 Striga asiatica HOM05D011630 ORTHO05D014269 7.6e-07 58.5 65 44.6
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 9.9e-07 58.2 123 32.5
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.9e-07 58.2 57 45.6
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 9.9e-07 58.2 115 33.0
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.3e-06 57.8 151 24.5
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 1.7e-06 57.4 129 30.2
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 2.2e-06 57.0 138 33.3
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.2e-06 57.0 108 38.9
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 2.2e-06 57.0 100 32.0
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.2e-06 57.0 57 50.9
BcaB03g16083 Brassica carinata HOM05D007774 ORTHO05D000309 2.9e-06 56.6 67 43.3
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.9e-06 56.6 92 29.3
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 2.9e-06 56.6 122 32.0
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 3.8e-06 56.2 109 30.3
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 4.9e-06 55.8 129 30.2
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 4.9e-06 55.8 134 29.9
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 4.9e-06 55.8 103 33.0
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 4.9e-06 55.8 113 32.7
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 4.9e-06 55.8 110 33.6
BcaB01g02010 Brassica carinata HOM05D007774 ORTHO05D000309 6.4e-06 55.5 67 43.3
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 6.4e-06 55.5 128 29.7
CANSAT01G0897 Cannabis sativa HOM05D001383 ORTHO05D000309 8.4e-06 55.1 52 44.2
CANSAT25G2075 Cannabis sativa HOM05D001383 ORTHO05D000309 8.4e-06 55.1 52 44.2
CANSAT25G2519 Cannabis sativa HOM05D001383 ORTHO05D000309 8.4e-06 55.1 52 44.2
CANSAT78G1368 Cannabis sativa HOM05D001383 ORTHO05D000309 8.4e-06 55.1 52 44.2


User provided reference genes

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