Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 1.9e-115 419.1 197 100.0
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 5.0e-39 165.2 171 56.1
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.1e-33 147.5 169 49.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.1e-33 145.6 169 50.3
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 5.3e-33 145.2 168 50.6
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 5.3e-33 145.2 168 50.6
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 9.0e-33 144.4 171 50.3
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 9.0e-33 144.4 168 50.6
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.2e-32 144.1 169 49.1
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 2.6e-32 142.9 169 48.5
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.4e-32 142.5 170 49.4
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 7.7e-32 141.4 171 48.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 7.7e-32 141.4 168 49.4
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 7.7e-32 141.4 168 48.8
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 7.7e-32 141.4 169 48.5
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 7.7e-32 141.4 169 48.5
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 1.3e-31 140.6 169 47.9
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.2e-31 139.8 169 47.9
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 5.0e-31 138.7 168 47.6
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.5e-31 137.9 165 49.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.1e-30 137.5 169 46.7
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.1e-30 137.5 169 48.5
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.9e-30 136.7 169 47.3
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.9e-30 136.7 168 48.2
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.2e-30 136.0 168 47.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 5.5e-30 135.2 169 48.5
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 5.5e-30 135.2 169 46.7
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.2e-29 134.0 171 47.4
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.6e-29 133.7 169 47.3
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.6e-29 133.7 169 47.9
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.6e-29 133.7 168 47.6
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 1.6e-29 133.7 172 46.5
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.1e-29 133.3 171 47.4
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.1e-29 133.3 169 47.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.7e-29 132.9 171 47.4
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 6.1e-29 131.7 171 47.4
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.4e-28 130.6 169 44.4
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.8e-28 130.2 171 46.8
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 3.0e-28 129.4 167 46.1
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.9e-28 129.0 171 46.2
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 3.9e-28 129.0 169 45.0
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 6.7e-28 128.3 169 46.7
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.1e-27 127.5 171 43.9
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.1e-27 127.5 171 45.6
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.5e-27 127.1 171 45.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.0e-27 126.7 171 46.2
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.0e-27 126.7 167 44.9
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.5e-27 126.3 169 46.7
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.5e-27 126.3 169 43.2
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 5.7e-27 125.2 171 45.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 5.7e-27 125.2 171 45.0
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.3e-26 124.0 171 45.0
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.3e-26 124.0 169 46.2
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-26 123.6 170 43.5
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.7e-26 123.6 169 43.8
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.8e-26 122.9 168 45.2
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 4.8e-26 122.1 171 44.4
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 6.3e-26 121.7 171 42.7
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 6.3e-26 121.7 74 77.0
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 8.2e-26 121.3 169 42.6
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 8.2e-26 121.3 164 45.1
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.4e-25 120.6 170 42.4
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 1.8e-25 120.2 171 42.1
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 9.1e-25 117.9 171 44.4
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.2e-24 117.5 171 44.4
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.2e-24 117.5 171 44.4
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.5e-24 117.1 167 43.1
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.7e-23 113.6 171 42.1
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 2.2e-23 113.2 73 72.6
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 2.9e-23 112.8 73 69.9
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 5.0e-23 112.1 171 42.1
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 6.5e-23 111.7 169 40.2
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.9e-22 110.2 73 71.2
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 5.5e-22 108.6 74 66.2
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 9.4e-22 107.8 167 39.5
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.2e-21 107.5 74 68.9
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.2e-21 107.5 171 39.8
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.7e-21 106.3 187 38.0
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 3.0e-20 102.8 173 38.2
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 3.9e-20 102.4 74 62.2
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.1e-20 102.1 148 44.6
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 6.7e-20 101.7 172 39.0
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 6.7e-20 101.7 172 39.0
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.3e-18 97.4 74 62.2
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 2.2e-18 96.7 168 37.5
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 2.2e-18 96.7 169 37.3
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 6.3e-18 95.1 167 35.3
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.1e-17 94.4 170 34.1
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.8e-17 93.6 71 57.7
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 2.4e-17 93.2 170 34.1
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 4.1e-17 92.4 72 59.7
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 5.3e-17 92.0 169 34.3
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 5.3e-17 92.0 73 60.3
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 5.3e-17 92.0 167 34.7
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 7.0e-17 91.7 167 35.3
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 7.0e-17 91.7 167 34.7
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 7.0e-17 91.7 167 35.3
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 7.0e-17 91.7 147 40.8
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 9.1e-17 91.3 167 34.1
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.0e-16 90.1 167 35.3
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-16 90.1 167 34.1
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-16 89.7 167 34.7
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 2.6e-16 89.7 167 34.7
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 2.6e-16 89.7 167 34.7
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 2.6e-16 89.7 63 65.1
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 5.9e-16 88.6 169 33.7
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 7.7e-16 88.2 167 33.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.2e-15 86.7 69 52.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 2.9e-15 86.3 164 33.5
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 2.9e-15 86.3 171 36.3
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 5.0e-15 85.5 167 33.5
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 5.0e-15 85.5 168 36.9
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 8.5e-15 84.7 69 52.2
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.2e-14 82.4 167 37.1
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 6.1e-13 78.6 75 49.3
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 1.4e-12 77.4 169 34.9
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.3e-12 76.6 172 32.6
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 4.4e-11 72.4 83 51.8
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 3.7e-10 69.3 65 49.2
SHI31584 Sapria himalayana HOM05D003481 ORTHO05D004001 2.6e-08 63.2 45 64.4


User provided reference genes

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