Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1942.2 971 100.0
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1734.2 1213 76.3
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1590.5 1199 69.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1202 68.9
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1437.9 1200 63.1
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1418.3 1191 62.6
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1411.0 1202 61.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1404.8 1202 61.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1401.3 1200 61.0
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1398.6 1202 61.1
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1395.6 1200 61.0
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1394.8 1193 61.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1394.0 1201 61.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1393.3 1199 61.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1389.8 1201 60.8
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1372.1 1203 61.2
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1370.9 1200 59.3
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1367.8 1200 59.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1364.0 1183 61.0
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1362.4 1198 60.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1361.3 1200 59.0
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1360.9 1198 60.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1360.1 1240 58.1
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1358.6 1200 59.7
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1352.4 1201 59.6
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1351.3 1216 58.6
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1351.3 1195 59.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1349.3 1200 59.1
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1349.0 1200 59.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1347.4 1202 59.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1345.5 1200 59.1
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1344.7 1200 59.4
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1343.9 1201 59.8
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1341.6 1200 59.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1339.7 1204 58.9
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1338.6 1201 58.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1334.3 1227 57.9
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1326.6 1200 58.3
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1321.6 1194 58.2
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1316.2 1194 57.5
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1314.7 1181 58.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1310.0 1311 54.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1306.2 1190 57.3
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1304.7 1196 58.0
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1301.6 1206 57.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1296.2 1198 56.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1293.1 878 73.0
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1287.7 1202 57.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1273.8 1206 56.5
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1256.1 1200 56.2
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1254.6 1201 56.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1244.2 1178 55.8
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1225.7 1125 57.7
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1224.9 1192 54.0
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1224.2 1192 53.9
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1223.0 1197 55.1
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1222.2 1192 53.9
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1221.8 1184 54.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1220.7 1197 53.5
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1217.6 1192 53.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1214.5 1191 53.1
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1212.6 1197 53.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1208.4 1204 54.7
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1206.0 1022 62.8
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1205.7 1195 53.1
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1205.7 1205 53.3
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1204.9 1200 52.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1196.8 1195 53.9
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1194.1 1182 53.9
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1193.3 1197 52.5
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1192.2 1235 51.4
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1187.9 1198 52.4
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1186.4 1172 53.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1181.0 1188 52.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1180.2 1197 51.8
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1179.1 883 66.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1177.5 1196 52.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1176.4 1261 51.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1174.8 1182 53.1
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1167.1 1205 51.2
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1164.8 1196 51.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1163.7 1205 51.5
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1160.6 1200 52.0
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1157.1 1202 51.8
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1153.7 855 69.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1152.9 1219 51.1
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1137.9 1246 49.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1125.2 1179 52.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1121.3 1178 50.8
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1113.6 1008 57.9
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1113.2 1179 52.1
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1099.7 1235 48.4
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1088.6 1195 50.0
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 2.9e-310 1068.5 948 57.7
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 5.0e-310 1067.8 711 73.8
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 4.3e-309 1064.7 1196 48.8
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 1.0e-294 1016.9 1191 47.4
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.0e-294 1016.9 1206 46.3
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.1e-292 1009.2 717 69.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 2.8e-292 1008.8 1191 46.3
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 7.8e-271 937.6 967 52.6
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 3.4e-266 922.2 1174 45.6
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.6e-255 886.7 1183 44.4
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 3.0e-246 855.9 1209 40.3
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 1.3e-241 840.5 1199 41.2
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 1.1e-240 837.4 1204 42.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 2.1e-239 833.2 1207 39.3
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.7e-239 832.8 1175 40.2
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.1e-221 774.2 820 51.7
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.2e-205 721.1 754 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.2e-197 694.5 875 43.0
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.7e-197 692.2 1029 42.6
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 4.6e-170 602.8 767 43.9
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.0e-169 601.7 387 76.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 3.9e-169 599.7 876 39.3
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 5.6e-144 516.2 590 48.8
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 7.9e-138 495.7 411 62.8
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.1e-131 475.3 716 39.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.4e-107 395.2 577 41.9
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 8.8e-97 359.4 375 49.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.3e-87 328.9 567 39.2
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.2e-77 295.8 484 38.8
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 3.7e-71 274.2 475 38.1
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 4.9e-63 247.3 289 46.4
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 6.0e-61 240.4 260 51.9
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.3e-60 239.2 179 68.7
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 6.2e-58 230.3 201 62.7
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 6.8e-57 226.9 293 44.0
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 3.9e-52 211.1 235 50.2
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.5e-45 188.0 126 73.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 2.6e-32 145.2 225 41.8
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 2.8e-26 125.2 149 50.3
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 6.9e-25 120.6 135 50.4
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.8e-15 88.2 68 61.8
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.9e-14 85.9 60 70.0
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 3.3e-11 75.1 51 62.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 5.7e-11 74.3 81 50.6
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 1.5e-08 66.2 44 68.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 3.4e-08 65.1 51 56.9
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 9.4e-06 57.0 31 87.1


User provided reference genes

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