Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 2.0e-175 619.0 309 100.0
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.7e-150 535.0 309 86.1
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.7e-148 528.9 310 86.1
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.7e-147 526.2 309 85.1
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.0e-147 525.4 309 85.4
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 5.0e-147 524.6 309 85.1
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 4.3e-146 521.5 309 84.8
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 8.0e-145 517.3 311 83.3
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 4.4e-143 511.5 309 81.6
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.3e-142 510.0 309 82.2
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.7e-142 509.6 309 84.1
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.2e-142 509.2 313 83.1
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.4e-141 506.5 310 81.6
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.2e-141 505.4 310 81.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 7.1e-141 504.2 309 81.6
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 9.2e-141 503.8 310 82.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.6e-140 503.1 309 82.2
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 4.6e-140 501.5 310 81.3
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 3.9e-139 498.4 309 82.5
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 8.6e-139 497.3 309 80.6
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 8.6e-139 497.3 309 79.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.1e-138 496.9 309 80.6
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.1e-138 496.9 309 80.3
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 4.3e-138 495.0 311 80.4
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 7.3e-138 494.2 311 80.1
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 9.5e-138 493.8 309 79.9
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 9.5e-138 493.8 309 80.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 2.1e-137 492.7 309 79.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.1e-137 492.7 309 78.3
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.8e-137 492.3 310 81.0
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 8.1e-137 490.7 310 81.0
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 1.1e-136 490.3 312 79.8
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.4e-136 490.0 309 78.3
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.4e-136 490.0 340 73.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 8.9e-136 487.3 309 79.3
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.5e-135 486.5 308 76.9
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.0e-135 486.1 309 78.6
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.0e-135 486.1 342 73.4
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 2.0e-135 486.1 309 78.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.6e-135 485.7 309 79.3
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 3.4e-135 485.3 310 79.4
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.3e-134 483.4 301 78.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.3e-134 483.4 309 78.3
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.3e-134 483.4 309 78.0
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 2.2e-134 482.6 309 78.0
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.9e-134 482.3 309 79.0
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 4.9e-134 481.5 309 77.7
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 6.4e-134 481.1 311 78.5
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 8.3e-134 480.7 309 78.6
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 8.3e-134 480.7 311 79.1
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.1e-133 480.3 312 78.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 2.4e-133 479.2 310 78.1
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 2.4e-133 479.2 309 78.3
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 5.4e-133 478.0 309 78.3
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 7.1e-133 477.6 293 80.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 9.2e-133 477.2 310 77.7
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.2e-132 476.9 312 77.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.6e-132 476.5 304 78.3
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.6e-132 476.5 309 78.0
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.1e-132 476.1 304 77.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 2.7e-132 475.7 313 77.3
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 2.7e-132 475.7 308 76.9
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.0e-131 473.8 310 76.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.0e-131 472.2 309 77.7
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 8.6e-131 470.7 313 77.0
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.1e-130 470.3 312 76.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.6e-129 466.5 292 81.5
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 8.9e-128 460.7 323 74.3
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.2e-127 460.3 311 75.6
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.5e-127 459.9 344 70.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 7.6e-127 457.6 309 75.1
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 6.4e-126 454.5 302 74.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 3.2e-125 452.2 238 91.6
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 7.1e-125 451.1 309 72.8
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 9.3e-125 450.7 279 83.5
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.2e-124 450.3 302 73.8
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.1e-124 449.5 302 73.8
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.1e-124 449.5 302 73.5
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 2.1e-124 449.5 302 73.5
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.1e-124 449.5 302 73.5
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.1e-124 449.5 302 73.5
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 7.8e-124 447.6 309 72.5
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.0e-123 447.2 260 84.2
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 3.0e-123 445.7 309 71.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.1e-122 443.7 236 88.6
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 1.5e-122 443.4 302 73.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.5e-122 442.6 309 75.1
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.3e-118 430.3 290 75.9
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.2e-118 429.5 281 79.0
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 3.9e-115 418.7 305 70.8
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 6.6e-115 417.9 304 68.4
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.4e-112 410.2 222 87.4
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.8e-112 409.8 240 82.1
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.8e-110 402.1 302 68.2
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.9e-109 399.8 258 79.5
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 4.6e-108 395.2 278 70.9
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 1.0e-99 367.5 238 75.6
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.3e-89 334.0 297 57.9
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 4.8e-89 332.0 302 56.6
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 3.1e-88 329.3 244 64.8
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 4.5e-87 325.5 293 63.8
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.9e-83 312.4 422 46.2
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 6.3e-81 305.1 219 70.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 4.0e-67 259.2 269 60.6
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 5.7e-66 255.4 213 62.0
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.6e-60 237.3 153 78.4
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.0e-54 215.7 297 39.7
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 8.5e-54 214.9 119 87.4
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 7.2e-53 211.8 219 48.9
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 6.8e-51 205.3 195 54.9
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 4.1e-48 196.1 116 75.0
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 5.9e-47 192.2 224 52.2
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 3.0e-43 179.9 175 57.7
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.0e-34 150.6 221 42.1
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.7e-30 137.5 122 60.7
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.3e-27 127.1 82 76.8
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 8.9e-27 125.2 73 79.5
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 4.0e-19 99.8 52 88.5
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.2e-18 98.2 54 81.5
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 5.8e-18 95.9 60 76.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.1e-16 91.7 55 81.8
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 1.9e-16 90.9 190 36.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 1.6e-15 87.8 52 75.0
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 2.3e-14 84.0 59 76.3
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.9e-14 83.2 147 38.1
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.5e-13 81.3 157 35.7
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.5e-13 80.5 54 74.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 6.4e-09 65.9 166 31.3
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.4e-08 64.7 92 47.8
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 1.9e-08 64.3 170 29.4
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 5.4e-08 62.8 183 30.1
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 5.4e-08 62.8 166 30.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.6e-07 61.2 49 71.4
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 7.8e-07 58.9 83 43.4
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 1.0e-06 58.5 203 27.6
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.3e-06 58.2 42 66.7
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-06 58.2 83 44.6
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 3.0e-06 57.0 53 50.9
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 3.0e-06 57.0 53 50.9
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 3.0e-06 57.0 26 88.5
Lsat_1_v5_gn_3_11781 Lactuca sativa HOM05D000104 ORTHO05D008354 3.9e-06 56.6 56 51.8
Lsat_1_v5_gn_5_43780 Lactuca sativa HOM05D005598 ORTHO05D008354 6.6e-06 55.8 40 65.0


User provided reference genes

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