Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 5.0e-82 307.8 158 100.0
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.1e-72 275.8 163 88.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 3.9e-71 271.6 163 87.7
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.7e-71 270.8 163 87.7
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.7e-69 266.2 161 86.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.8e-69 265.4 161 86.3
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.7e-69 265.0 163 83.4
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.8e-68 262.7 163 82.8
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.4e-68 262.3 161 82.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.4e-68 262.3 162 82.7
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.4e-68 262.3 163 82.2
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.1e-68 261.9 162 86.4
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.1e-68 261.9 162 86.4
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.1e-68 261.9 163 83.4
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.1e-68 261.5 163 83.4
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.1e-68 261.5 163 83.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.1e-68 261.5 163 83.4
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.1e-68 261.5 163 82.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.1e-68 261.5 163 83.4
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.9e-68 260.8 161 83.9
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.9e-68 260.8 163 81.6
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 9.1e-68 260.4 161 83.9
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.5e-67 259.6 163 82.2
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.5e-67 259.6 160 84.4
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.5e-67 259.6 163 82.8
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.0e-67 259.2 163 82.8
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.0e-67 259.2 161 83.9
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.0e-67 259.2 161 83.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.0e-67 259.2 161 83.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.0e-67 259.2 163 82.8
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.0e-67 259.2 160 83.1
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.0e-67 259.2 160 83.1
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.6e-67 258.8 161 82.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.6e-67 258.8 161 82.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 4.5e-67 258.1 163 82.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.9e-67 257.7 163 81.6
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.0e-66 256.9 159 83.6
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.3e-66 256.5 163 81.6
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.3e-66 256.5 164 81.1
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.3e-66 256.5 161 82.6
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.7e-66 256.1 160 82.5
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 1.7e-66 256.1 163 80.4
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.9e-66 255.4 164 82.3
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 2.9e-66 255.4 163 82.8
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 3.8e-66 255.0 164 81.7
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 5.0e-66 254.6 164 81.7
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 5.0e-66 254.6 164 81.7
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 5.0e-66 254.6 165 80.6
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 5.0e-66 254.6 165 80.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.5e-66 254.2 159 82.4
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 6.5e-66 254.2 163 81.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 6.5e-66 254.2 163 81.0
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 8.5e-66 253.8 163 80.4
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 8.5e-66 253.8 159 82.4
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 8.5e-66 253.8 163 82.2
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.1e-65 253.4 163 81.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.1e-65 253.4 163 83.4
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.1e-65 253.4 159 82.4
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.4e-65 253.1 159 82.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.9e-65 252.7 159 81.8
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.9e-65 252.7 164 79.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.9e-65 252.7 164 79.9
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 2.5e-65 252.3 163 82.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 3.2e-65 251.9 159 81.8
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 4.2e-65 251.5 163 81.0
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 5.5e-65 251.1 159 81.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-65 250.8 159 81.8
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-65 250.8 159 81.8
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-65 250.8 159 81.8
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 7.2e-65 250.8 159 81.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 7.2e-65 250.8 159 81.8
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 7.2e-65 250.8 163 77.9
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 7.2e-65 250.8 165 79.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 9.4e-65 250.4 163 80.4
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.4e-65 250.4 165 78.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.2e-64 250.0 163 79.1
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.2e-64 250.0 163 79.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-64 249.6 163 78.5
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.1e-64 249.2 163 79.8
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.7e-64 248.8 162 79.6
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 3.6e-64 248.4 161 83.2
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.6e-64 248.4 160 77.5
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 6.1e-64 247.7 165 81.2
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 7.9e-64 247.3 164 79.3
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.0e-63 246.9 164 79.9
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.0e-63 246.9 165 77.0
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.4e-63 246.5 161 78.3
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.8e-63 246.1 163 77.9
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.8e-63 246.1 160 80.0
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.8e-63 246.1 160 80.0
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.3e-63 245.7 163 77.9
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 3.0e-63 245.4 161 78.3
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.9e-63 245.0 164 78.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.1e-62 243.4 163 77.9
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.1e-62 243.4 160 79.4
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.1e-62 243.4 163 79.1
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.5e-62 243.0 163 78.5
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.0e-62 242.7 161 77.6
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-62 242.7 163 77.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 2.6e-62 242.3 160 80.6
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.3e-62 241.9 165 80.0
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 3.3e-62 241.9 160 75.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 3.3e-62 241.9 163 79.1
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 5.7e-62 241.1 165 80.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 6.3e-61 237.7 163 74.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.4e-60 236.5 161 78.3
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.4e-60 236.5 164 78.0
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.1e-60 235.3 163 76.7
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 9.1e-60 233.8 161 75.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.6e-59 233.0 161 77.6
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 2.0e-59 232.6 163 77.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.5e-57 225.7 161 75.2
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.8e-55 219.5 161 69.6
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.1e-54 216.9 163 69.3
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 9.7e-54 213.8 136 83.1
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.8e-53 211.5 161 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.7e-51 205.7 160 65.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.2e-49 198.7 161 62.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 2.1e-48 196.1 147 71.4
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 3.5e-43 178.7 157 59.9
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-42 177.2 128 74.2
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.4e-36 156.0 84 92.9
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 9.5e-33 144.1 91 79.1
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 4.4e-30 135.2 96 72.9
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.7e-30 134.8 81 81.5
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.3e-29 133.7 83 84.3
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.8e-22 108.2 81 75.3
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.0e-20 101.3 162 41.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.0e-20 101.3 162 41.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.5e-17 93.6 77 66.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 7.5e-14 81.3 94 53.2


User provided reference genes

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