Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.6e-111 406.4 242 100.0
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.6e-108 396.4 242 98.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 5.4e-104 381.3 242 94.6
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 8.9e-99 364.0 240 89.6
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 2.2e-97 359.4 242 87.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.9e-97 359.0 242 87.6
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 8.3e-97 357.5 242 84.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.1e-96 357.1 242 83.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.9e-96 356.3 242 86.8
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.1e-96 355.1 242 87.6
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 7.1e-96 354.4 242 86.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 86.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 83.9
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.1e-95 352.8 242 87.2
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.7e-94 349.7 242 85.5
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.3e-94 349.4 242 76.9
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.9e-94 348.6 241 83.8
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.9e-94 348.6 242 84.7
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 3.9e-94 348.6 241 83.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 6.6e-94 347.8 242 84.3
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 8.6e-94 347.4 242 86.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 8.6e-94 347.4 243 79.8
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.5e-93 346.7 241 85.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.5e-93 345.9 242 81.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.3e-93 344.4 241 75.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 82.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 76.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 83.8
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.2e-92 343.6 242 82.2
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.8e-92 342.4 243 75.7
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.7e-92 341.7 241 83.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 83.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 83.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 6.2e-92 341.3 242 76.4
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 82.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.1e-92 340.9 243 78.6
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.1e-91 340.5 241 83.4
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.1e-91 340.5 243 74.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 82.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.4e-91 340.1 236 85.2
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 76.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.4e-91 339.3 237 75.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.2e-91 338.2 240 75.4
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.8e-91 337.8 206 83.5
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.9e-91 337.4 241 82.2
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 8.9e-91 337.4 243 82.3
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.5e-90 336.7 243 77.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.5e-90 336.7 242 83.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.0e-90 336.3 242 77.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.6e-90 335.9 243 78.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.4e-90 335.5 228 88.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 4.4e-90 335.1 243 82.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 7.6e-90 334.3 243 77.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 74.4
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 76.0
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 73.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 81.7
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 6.4e-89 331.3 241 83.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 8.4e-89 330.9 238 82.4
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 8.4e-89 330.9 242 80.6
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.2e-88 328.9 243 76.5
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 4.2e-88 328.6 199 84.9
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 79.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 7.1e-88 327.8 246 70.3
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 9.3e-88 327.4 242 71.1
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 9.3e-88 327.4 233 81.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.6e-87 326.6 241 80.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.1e-87 326.2 243 72.8
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.5e-87 325.5 243 72.4
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 4.6e-87 325.1 201 83.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.6e-87 325.1 242 79.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 4.6e-87 325.1 199 84.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 6.0e-87 324.7 245 71.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.0e-87 324.7 210 82.4
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.8e-87 324.3 243 72.4
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 7.8e-87 324.3 242 79.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.0e-86 323.9 228 82.0
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-86 323.9 243 72.8
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.0e-86 323.9 206 79.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.7e-86 323.2 209 82.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.6e-86 321.2 243 72.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.7e-86 320.9 243 74.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.5e-85 320.1 205 80.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.9e-85 319.7 243 77.4
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 206 78.6
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.5e-85 319.3 241 69.7
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.3e-85 318.9 243 73.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 7.3e-85 317.8 241 76.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.6e-85 317.4 194 84.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.3e-84 317.0 242 73.6
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.6e-84 316.6 245 77.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.8e-84 315.8 205 79.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 6.2e-84 314.7 207 77.8
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 8.1e-84 314.3 240 69.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.8e-83 313.2 229 79.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 5.8e-82 308.1 241 66.8
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 4.9e-81 305.1 244 75.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.9e-81 305.1 241 67.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.1e-80 303.9 243 74.5
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.2e-80 302.4 210 85.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 9.3e-80 300.8 205 73.7
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.6e-79 300.1 207 77.3
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.7e-79 299.3 207 76.8
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.0e-78 295.8 208 74.5
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.0e-78 295.8 208 75.5
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.0e-78 295.8 241 75.5
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.1e-78 295.0 208 74.0
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.1e-78 295.0 227 74.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 8.7e-78 294.3 243 72.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 8.7e-78 294.3 208 75.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.9e-77 293.1 243 65.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 7.3e-77 291.2 208 73.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.1e-76 289.7 244 68.9
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.8e-76 289.3 183 80.9
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 3.6e-76 288.9 243 72.4
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 4.8e-76 288.5 208 73.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.3e-75 285.0 208 71.2
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.3e-75 285.0 208 71.2
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.6e-74 282.7 208 70.7
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.6e-74 282.7 208 70.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 6.7e-70 268.1 203 67.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.7e-70 267.7 178 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 5.6e-69 265.0 192 70.8
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.8e-68 261.9 227 61.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.6e-61 237.7 192 64.1
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 9.6e-61 237.7 206 67.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.8e-60 236.1 157 77.1
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 5.0e-57 225.3 188 63.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.9e-56 223.4 205 60.0
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 2.6e-50 203.0 170 69.4
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.3e-49 200.7 133 76.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.0e-46 189.5 111 82.0
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.1e-43 179.1 206 55.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.4e-38 164.1 176 50.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.2e-36 156.8 173 49.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.7e-36 156.0 105 73.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.3e-28 131.0 185 42.2
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.7e-28 130.6 86 73.3
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 7.0e-27 125.2 92 70.7
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.2e-18 97.8 181 33.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.0e-17 92.4 90 72.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.5e-16 89.0 54 77.8
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.7e-15 85.9 53 83.0
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 9.8e-13 78.2 179 31.8
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 8.9e-06 55.1 49 63.3


User provided reference genes

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