Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0569811 Helianthus annuus HOM05D000732 ORTHO05D007225 5.0e-102 374.8 238 100.0
ECA234G3466 Erigeron canadensis HOM05D000732 ORTHO05D007225 7.5e-58 228.0 266 51.5
Lsat_1_v5_gn_8_157120 Lactuca sativa HOM05D000732 ORTHO05D007225 5.2e-51 205.3 267 47.9
HanXRQChr08g0208801 Helianthus annuus HOM05D000732 ORTHO05D007225 2.0e-50 203.4 277 50.9
Lsat_1_v5_gn_4_5860 Lactuca sativa HOM05D000732 ORTHO05D007225 3.7e-49 199.1 243 51.4
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 8.3e-49 198.0 307 42.0
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 7.8e-47 191.4 288 43.1
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 1.0e-46 191.0 298 41.9
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 1.0e-46 191.0 298 41.6
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 2.3e-46 189.9 287 42.5
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 3.0e-46 189.5 300 43.3
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 8.6e-46 188.0 321 41.7
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 1.1e-45 187.6 244 48.8
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 1.5e-45 187.2 309 40.8
SGA_v2.0_scaffold165G38244 Striga asiatica HOM05D000732 ORTHO05D007225 1.9e-45 186.8 286 44.4
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 2.5e-45 186.4 301 41.9
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 4.3e-45 185.7 284 43.0
SalBow2G2423 Salvia bowleyana HOM05D000732 ORTHO05D007225 4.3e-45 185.7 259 44.4
vmacro16252 Vaccinium macrocarpon HOM05D000732 ORTHO05D007225 4.3e-45 185.7 286 43.4
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 7.3e-45 184.9 296 43.2
ECA233G2480 Erigeron canadensis HOM05D000732 ORTHO05D007225 9.5e-45 184.5 283 43.8
Lj3C1052T10 Lonicera japonica HOM05D000732 ORTHO05D007225 9.5e-45 184.5 305 40.7
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 1.6e-44 183.7 298 42.3
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 1.6e-44 183.7 303 41.3
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 1.6e-44 183.7 297 41.8
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 2.1e-44 183.3 277 41.5
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.8e-44 183.0 285 41.4
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 3.6e-44 182.6 301 42.5
Hund05994 Selenicereus undatus HOM05D000732 ORTHO05D007225 4.7e-44 182.2 304 41.8
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 8.1e-44 181.4 283 42.0
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 8.1e-44 181.4 294 42.5
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 1.1e-43 181.0 288 42.0
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 1.4e-43 180.6 304 40.8
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 1.4e-43 180.6 303 40.6
Rhsim12G0120000 Rhododendron simsii HOM05D000732 ORTHO05D007225 1.4e-43 180.6 291 41.2
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.8e-43 180.3 290 42.1
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 2.3e-43 179.9 294 41.2
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 4.0e-43 179.1 304 40.5
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 6.8e-43 178.3 297 41.1
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 6.8e-43 178.3 284 42.6
Hma1.2p1_0867F.1_g230180 Hydrangea macrophylla HOM05D000732 ORTHO05D007225 6.8e-43 178.3 294 42.5
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 6.8e-43 178.3 289 40.8
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 6.8e-43 178.3 305 41.6
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 8.9e-43 177.9 286 41.3
Sed0004489 Sechium edule HOM05D000732 ORTHO05D007225 8.9e-43 177.9 273 41.4
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.5e-42 177.2 297 40.4
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 1.5e-42 177.2 285 41.1
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 2.0e-42 176.8 297 40.7
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 2.6e-42 176.4 284 42.6
Nitab4.5_0002494g0010 Nicotiana tabacum HOM05D000732 ORTHO05D007225 2.6e-42 176.4 281 41.6
CAN.G388.57 Capsicum annuum HOM05D000732 ORTHO05D007225 3.4e-42 176.0 301 42.2
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 3.4e-42 176.0 301 39.9
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 3.4e-42 176.0 281 41.6
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 4.4e-42 175.6 274 40.9
Solyc05g005580.3 Solanum lycopersicum HOM05D000732 ORTHO05D007225 4.4e-42 175.6 300 41.0
Sopen05g001590 Solanum pennellii HOM05D000392 ORTHO05D000001 4.4e-42 175.6 298 41.3
PGSC0003DMG400030993 Solanum tuberosum HOM05D000732 ORTHO05D007225 4.4e-42 175.6 289 46.7
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 1.7e-41 173.7 281 40.9
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 2.2e-41 173.3 284 42.3
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 2.9e-41 172.9 277 44.0
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 3.7e-41 172.6 295 42.0
Potri.008G192300 Populus trichocarpa HOM05D000732 ORTHO05D007225 4.9e-41 172.2 304 39.8
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 4.9e-41 172.2 290 40.3
Potri.010G038600 Populus trichocarpa HOM05D000732 ORTHO05D007225 8.3e-41 171.4 306 40.5
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 1.1e-40 171.0 294 41.5
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 1.9e-40 170.2 285 40.4
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 4.1e-40 169.1 290 41.0
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 4.1e-40 169.1 305 40.3
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 4.1e-40 169.1 289 39.4
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 4.1e-40 169.1 289 39.4
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 5.4e-40 168.7 267 46.1
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 5.4e-40 168.7 309 36.6
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 7.1e-40 168.3 309 37.9
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 7.1e-40 168.3 285 40.4
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 2.1e-39 166.8 274 39.8
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 3.5e-39 166.0 299 39.8
Prupe.1G254000 Prunus persica HOM05D000732 ORTHO05D007225 7.8e-39 164.9 310 38.7
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 1.3e-38 164.1 256 41.0
PGR102G0434 Punica granatum HOM05D000732 ORTHO05D007225 1.3e-38 164.1 297 40.1
CsaV3_2G024570 Cucumis sativus L. HOM05D000732 ORTHO05D007225 1.7e-38 163.7 295 38.3
Migut.L01414 Erythranthe guttata HOM05D000732 ORTHO05D007225 3.0e-38 162.9 294 41.5
MD13G1091800 Malus domestica HOM05D000732 ORTHO05D007225 3.9e-38 162.5 303 37.6
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 1.1e-37 161.0 227 44.1
unitig_25.g30566 Utricularia gibba HOM05D000732 ORTHO05D007225 1.5e-37 160.6 267 41.2
RhsimUnG0193300 Rhododendron simsii HOM05D000732 ORTHO05D007225 1.9e-37 160.2 292 39.4
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 4.3e-37 159.1 249 41.4
Nitab4.5_0000113g0290 Nicotiana tabacum HOM05D000732 ORTHO05D007225 5.6e-37 158.7 261 40.6
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 1.6e-36 157.1 271 45.0
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 1.6e-36 157.1 231 46.3
unitig_22.g6465 Utricularia gibba HOM05D000732 ORTHO05D007225 1.6e-36 157.1 267 40.4
Sabra10G0027600 Salix brachista HOM05D000732 ORTHO05D007225 2.8e-36 156.4 295 39.0
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 3.6e-36 156.0 259 39.0
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 4.7e-36 155.6 229 40.2
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 6.2e-36 155.2 231 45.9
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 6.2e-36 155.2 254 42.5
MBI16_g26454_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D007225 1.1e-35 154.5 295 37.3
Nitab4.5_0004308g0060 Nicotiana tabacum HOM05D000732 ORTHO05D007225 1.1e-35 154.5 288 38.9
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 3.1e-35 152.9 255 48.2
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 3.1e-35 152.9 282 38.7
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 6.8e-35 151.8 252 46.4
ClCG08G018070 Citrullus lanatus HOM05D000732 ORTHO05D007225 6.8e-35 151.8 308 36.4
PSO063G5642 Papaver somniferum HOM05D000732 ORTHO05D007225 1.2e-34 151.0 300 35.7
Sc11g0001190 Simmondsia chinensis HOM05D000732 ORTHO05D007225 1.5e-34 150.6 329 35.9
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 2.0e-34 150.2 255 43.9
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 2.0e-34 150.2 255 43.9
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 2.6e-34 149.8 256 47.3
Peaxi162Scf00338g00223 Petunia axillaris HOM05D000732 ORTHO05D007225 2.6e-34 149.8 311 37.9
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 5.8e-34 148.7 251 47.0
Aqoxy3G01008 Aquilegia oxysepala HOM05D000732 ORTHO05D007225 2.9e-33 146.4 309 35.6
PSO832G2552 Papaver somniferum HOM05D000732 ORTHO05D007225 2.9e-33 146.4 307 34.5
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 1.9e-32 143.7 269 38.3
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 1.9e-32 143.7 299 35.8
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 1.9e-32 143.7 261 36.8
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 1.9e-32 143.7 261 36.8
ATR0730G107 Amborella trichopoda HOM05D000732 ORTHO05D007225 7.1e-32 141.7 307 34.5
SHI27223 Sapria himalayana HOM05D000732 ORTHO05D007225 9.2e-32 141.4 281 34.9
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 1.2e-31 141.0 269 35.7
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 1.2e-31 141.0 259 36.3
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 4.6e-31 139.0 272 35.7
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 6.0e-31 138.7 245 36.3
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 5.1e-30 135.6 262 36.3
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 6.6e-30 135.2 231 36.8
MELO3C010661.2 Cucumis melo HOM05D000732 ORTHO05D007225 7.3e-29 131.7 266 36.5
Medtr5g034380 Medicago truncatula HOM05D000732 ORTHO05D013253 1.7e-25 120.6 160 43.1
Actinidia13509 Actinidia chinensis HOM05D000732 ORTHO05D007225 1.6e-23 114.0 112 60.7
Zm00001eb126560 Zea mays HOM05D000732 ORTHO05D007225 2.1e-23 113.6 294 36.1
Lsat_1_v5_gn_1_5940 Lactuca sativa HOM05D005655 ORTHO05D007386 3.5e-23 112.8 201 39.3
Atru.chr11.2022 Acer truncatum HOM05D000732 ORTHO05D007225 4.6e-23 112.5 195 37.9
QL08p001505 Quercus lobata HOM05D000732 ORTHO05D013253 4.6e-23 112.5 90 60.0
CDE05G0223 Ceratophyllum demersum HOM05D000732 ORTHO05D007225 9.3e-16 88.2 99 48.5
HPP92_003802 Vanilla planifolia HOM05D000732 ORTHO05D007225 1.2e-15 87.8 211 32.7
Zm00001eb256770 Zea mays HOM05D000482 ORTHO05D007225 4.6e-15 85.9 99 46.5
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 9.6e-13 78.2 170 31.2
Hma1.2p1_0421F.1_g149940 Hydrangea macrophylla HOM05D000732 ORTHO05D013253 1.6e-12 77.4 83 50.6
SEGI_07181 Sequoiadendron giganteum HOM05D000732 ORTHO05D007225 4.5e-10 69.3 90 42.2
SMO351G0407 Selaginella moellendorffii HOM05D000732 ORTHO05D001037 7.6e-10 68.6 235 23.4
Zm00001eb390870 Zea mays HOM05D000732 ORTHO05D007225 1.3e-09 67.8 71 46.5
SEGI_11236 Sequoiadendron giganteum HOM05D000732 ORTHO05D007225 4.2e-08 62.8 77 41.6
Ciclev10018994m.g Citrus clementina HOM05D000732 ORTHO05D001037 3.5e-07 59.7 72 47.2
THA.LOC104805816 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 3.5e-07 59.7 81 42.0
DCAR_028427 Daucus carota HOM05D000732 ORTHO05D001037 4.6e-07 59.3 86 40.7
Duzib212G0594 Durio zibethinus HOM05D000732 ORTHO05D001037 4.6e-07 59.3 72 47.2
Duzib268G0812 Durio zibethinus HOM05D000732 ORTHO05D001037 4.6e-07 59.3 73 47.9
AT1G08760 Arabidopsis thaliana HOM05D000732 ORTHO05D001037 6.0e-07 58.9 81 43.2
C07p09680 Brassica napus HOM05D000732 ORTHO05D013253 7.9e-07 58.5 67 44.8
COL.COLO4_08221 Corchorus olitorius HOM05D000732 ORTHO05D001037 1.0e-06 58.2 75 46.7
Hma1.2p1_0324F.1_g125630 Hydrangea macrophylla HOM05D000732 ORTHO05D001037 1.0e-06 58.2 73 43.8
THA.LOC104821115 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 1.0e-06 58.2 93 39.8
Thecc.04G174200 Theobroma cacao HOM05D000732 ORTHO05D001037 1.0e-06 58.2 73 46.6
BcaC07g41927 Brassica carinata HOM05D000732 ORTHO05D001037 1.3e-06 57.8 81 42.0
A04p20940 Brassica napus HOM05D000732 ORTHO05D013253 1.3e-06 57.8 67 43.3
BolC7t41407H Brassica oleracea HOM05D000732 ORTHO05D013253 1.3e-06 57.8 62 46.8
Gohir.A10G140000 Gossypium hirsutum HOM05D000732 ORTHO05D001037 1.3e-06 57.8 70 47.1
Gohir.D10G126800 Gossypium hirsutum HOM05D000732 ORTHO05D001037 1.3e-06 57.8 69 47.8
Carub.0001s0810 Capsella rubella HOM05D000732 ORTHO05D001037 1.8e-06 57.4 81 42.0
Lj6A108G19 Lonicera japonica HOM05D000732 ORTHO05D001037 2.3e-06 57.0 93 35.5
AUR62002353 Chenopodium quinoa HOM05D000732 ORTHO05D001037 3.0e-06 56.6 84 36.9
Thhalv10006887m.g Eutrema salsugineum HOM05D000732 ORTHO05D001037 3.0e-06 56.6 81 40.7
Gohir.D02G011900 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.0e-06 56.6 73 45.2
Gorai.005G015300 Gossypium raimondii HOM05D000732 ORTHO05D001037 3.0e-06 56.6 73 45.2
Gorai.011G139700 Gossypium raimondii HOM05D000732 ORTHO05D001037 3.0e-06 56.6 69 46.4
vmacro00615 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 3.0e-06 56.6 73 43.8
vmacro00678 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 3.0e-06 56.6 73 43.8
AUR62023831 Chenopodium quinoa HOM05D000732 ORTHO05D001037 3.9e-06 56.2 84 36.9
Gohir.A02G011100 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.9e-06 56.2 73 45.2
A10p33080 Brassica napus HOM05D000732 ORTHO05D013253 5.1e-06 55.8 56 48.2
BraA09t41920Z Brassica rapa HOM05D000732 ORTHO05D001037 5.1e-06 55.8 110 38.2
CANSAT78G1705 Cannabis sativa HOM05D000732 ORTHO05D001037 5.1e-06 55.8 73 42.5
SalBow6G2995 Salvia bowleyana HOM05D000732 ORTHO05D001037 5.1e-06 55.8 73 42.5
TAR362G0289 Trochodendron aralioides HOM05D000732 ORTHO05D001037 5.1e-06 55.8 73 39.7
HPP92_005580 Vanilla planifolia HOM05D000732 ORTHO05D001037 5.1e-06 55.8 73 42.5
Actinidia34579 Actinidia chinensis HOM05D000732 ORTHO05D001037 6.7e-06 55.5 73 43.8
AL1G19190 Arabidopsis lyrata HOM05D000732 ORTHO05D001037 6.7e-06 55.5 81 40.7
BcaB03g13315 Brassica carinata HOM05D000732 ORTHO05D001037 6.7e-06 55.5 94 38.3
A09p65770 Brassica napus HOM05D000239 ORTHO05D001037 6.7e-06 55.5 110 38.2
CSS0021096 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 6.7e-06 55.5 73 42.5
HPP92_005594 Vanilla planifolia HOM05D000732 ORTHO05D001037 6.7e-06 55.5 73 42.5
Actinidia27087 Actinidia chinensis HOM05D000732 ORTHO05D001037 8.7e-06 55.1 73 43.8
Aa31LG2G18700 Aethionema arabicum HOM05D000732 ORTHO05D001037 8.7e-06 55.1 81 39.5
A06p05660 Brassica napus HOM05D004756 ORTHO05D005793 8.7e-06 55.1 80 41.2
BraA06t23776Z Brassica rapa HOM05D000732 ORTHO05D001037 8.7e-06 55.1 80 41.2
ECA233G5137 Erigeron canadensis HOM05D000732 ORTHO05D001037 8.7e-06 55.1 73 42.5
PSO017G4930 Papaver somniferum HOM05D000732 ORTHO05D001037 8.7e-06 55.1 73 38.4
Rhsim09G0021700 Rhododendron simsii HOM05D000732 ORTHO05D001037 8.7e-06 55.1 73 42.5
Sc13g0006710 Simmondsia chinensis HOM05D000732 ORTHO05D001037 8.7e-06 55.1 80 36.2


User provided reference genes

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