Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0557381 Helianthus annuus HOM05D001927 ORTHO05D001972 2.2e-68 262.3 147 100.0
HanXRQChr09g0258171 Helianthus annuus HOM05D001927 ORTHO05D001972 1.7e-12 76.6 59 72.9
HanXRQChr14g0442441 Helianthus annuus HOM05D001927 ORTHO05D001972 1.6e-10 70.1 59 67.8
Lsat_1_v5_gn_2_73501 Lactuca sativa HOM05D001927 ORTHO05D001972 1.4e-09 67.0 59 62.7
GSVIVG01003842001 Vitis vinifera HOM05D001927 ORTHO05D001972 6.8e-09 64.7 61 57.4
COL.COLO4_17934 Corchorus olitorius HOM05D001927 ORTHO05D001972 2.0e-08 63.2 70 52.9
Lsat_1_v5_gn_3_70161 Lactuca sativa HOM05D001927 ORTHO05D001972 2.0e-08 63.2 59 54.2
Atru.chr5.3550 Acer truncatum HOM05D001927 ORTHO05D001972 2.6e-08 62.8 59 59.3
Lj2C496T4 Lonicera japonica HOM05D001927 ORTHO05D001972 3.4e-08 62.4 59 59.3
TPR.G25116 Trifolium pratense HOM05D001927 ORTHO05D001972 5.8e-08 61.6 90 47.8
vmacro20528 Vaccinium macrocarpon HOM05D001927 ORTHO05D001972 7.5e-08 61.2 59 59.3
Duzib132G0855 Durio zibethinus HOM05D001927 ORTHO05D001972 9.8e-08 60.8 59 57.6
Duzib248G1388 Durio zibethinus HOM05D001927 ORTHO05D001972 9.8e-08 60.8 59 55.9
Duzib052G0080 Durio zibethinus HOM05D001927 ORTHO05D001972 1.3e-07 60.5 59 57.6
CDE02G2418 Ceratophyllum demersum HOM05D001927 ORTHO05D001972 1.7e-07 60.1 59 52.5
Sp7g33070 Schrenkiella parvula HOM05D001927 ORTHO05D001972 1.7e-07 60.1 59 55.9
CSS0009793 Camellia sinensis var. sinensis HOM05D001927 ORTHO05D001972 2.2e-07 59.7 59 57.6
CDE04G0090 Ceratophyllum demersum HOM05D001927 ORTHO05D001972 2.2e-07 59.7 59 50.8
MD15G1232900 Malus domestica HOM05D001927 ORTHO05D001972 2.2e-07 59.7 59 57.6
THA.LOC104819722 Tarenaya hassleriana HOM05D001927 ORTHO05D001972 2.2e-07 59.7 59 57.6
Thecc.02G044900 Theobroma cacao HOM05D001927 ORTHO05D001972 2.2e-07 59.7 59 55.9
Actinidia18003 Actinidia chinensis HOM05D001927 ORTHO05D001972 2.9e-07 59.3 59 54.2
Ah.01g023720 Amaranthus hybridus HOM05D001927 ORTHO05D001972 2.9e-07 59.3 59 54.2
EL10Ac9g21246 Beta vulgaris HOM05D001927 ORTHO05D001972 2.9e-07 59.3 70 48.6
CANSAT25G0497 Cannabis sativa HOM05D001927 ORTHO05D001972 2.9e-07 59.3 59 52.5
Cpa.g.sc535.2 Carica papaya HOM05D001927 ORTHO05D001972 2.9e-07 59.3 59 55.9
Prupe.7G181000 Prunus persica HOM05D001927 ORTHO05D001972 2.9e-07 59.3 59 55.9
Aa31LG8G14570 Aethionema arabicum HOM05D001927 ORTHO05D001972 3.7e-07 58.9 59 54.2
DCAR_006288 Daucus carota HOM05D001927 ORTHO05D001972 3.7e-07 58.9 59 55.9
Dinv08525 Davidia involucrata HOM05D001927 ORTHO05D001972 3.7e-07 58.9 59 55.9
Lalb_Chr09g0321261 Lupinus albus HOM05D001927 ORTHO05D001972 3.7e-07 58.9 59 54.2
MBI05_g12023_MAGBIO Magnolia biondii HOM05D001927 ORTHO05D001972 3.7e-07 58.9 35 77.1
Sed0007443 Sechium edule HOM05D001927 ORTHO05D001972 3.7e-07 58.9 33 81.8
MSTRG.5470 Avicennia marina HOM05D001927 ORTHO05D001972 4.9e-07 58.5 59 54.2
CiPaw.06G116800 Carya illinoinensis HOM05D001927 ORTHO05D001972 4.9e-07 58.5 59 52.5
Nn5g30962 Nelumbo nucifera HOM05D001927 ORTHO05D001972 4.9e-07 58.5 59 54.2
HPP92_022691 Vanilla planifolia HOM05D001927 ORTHO05D001972 4.9e-07 58.5 91 41.8
Actinidia28742 Actinidia chinensis HOM05D001927 ORTHO05D001972 6.4e-07 58.2 33 81.8
Gohir.A03G209500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 54.2
Gohir.D02G231200 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 54.2
Gohir.D04G170400 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 54.2
Gorai.005G258800 Gossypium raimondii HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 54.2
Gorai.012G158800 Gossypium raimondii HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 54.2
Lj4C234G1 Lonicera japonica HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 55.9
Lju41C23G3 Lonicera japonica HOM05D000250 ORTHO05D000625 6.4e-07 58.2 59 55.9
Sabra04G0138400 Salix brachista HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 55.9
vmacro02328 Vaccinium macrocarpon HOM05D001927 ORTHO05D001972 6.4e-07 58.2 59 52.5
Atru.chr3.963 Acer truncatum HOM05D001927 ORTHO05D001972 8.3e-07 57.8 87 44.8
Atru.chr3.975 Acer truncatum HOM05D001927 ORTHO05D001972 8.3e-07 57.8 87 44.8
BcaNung00611 Brassica carinata HOM05D001927 ORTHO05D001972 8.3e-07 57.8 58 55.2
Phvul.002G115300 Phaseolus vulgaris HOM05D001927 ORTHO05D001972 8.3e-07 57.8 59 55.9
QL11p055598 Quercus lobata HOM05D001927 ORTHO05D001972 8.3e-07 57.8 59 50.8
QL11p055900 Quercus lobata HOM05D001927 ORTHO05D001972 8.3e-07 57.8 59 50.8
Rhsim11G0197000 Rhododendron simsii HOM05D001927 ORTHO05D001972 8.3e-07 57.8 67 49.3
Thecc.01G006700 Theobroma cacao HOM05D001927 ORTHO05D001972 8.3e-07 57.8 59 52.5
VMungo1215G1850 Vigna mungo HOM05D001927 ORTHO05D001972 8.3e-07 57.8 59 55.9
C01p03620 Brassica napus HOM05D001927 ORTHO05D001972 1.1e-06 57.4 58 55.2
Cpa.g.sc20.203 Carica papaya HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 54.2
CiPaw.05G091600 Carya illinoinensis HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
AUR62011703 Chenopodium quinoa HOM05D001927 ORTHO05D001972 1.1e-06 57.4 33 78.8
AUR62012926 Chenopodium quinoa HOM05D001927 ORTHO05D001972 1.1e-06 57.4 33 78.8
Haze_02017 Corylus avellana HOM05D001927 ORTHO05D001972 1.1e-06 57.4 61 52.5
Glyma.16G118400 Glycine max HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
Gohir.A01G174800 Gossypium hirsutum HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
Gohir.A12G033500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 54.2
Gohir.D01G165900 Gossypium hirsutum HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
Gohir.D12G039300 Gossypium hirsutum HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 54.2
Gorai.002G206400 Gossypium raimondii HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
Gorai.008G041000 Gossypium raimondii HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 54.2
Lalb_Chr05g0211891 Lupinus albus HOM05D001927 ORTHO05D001972 1.1e-06 57.4 58 55.2
Lalb_Chr16g0377241 Lupinus albus HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
MD05G1134300 Malus domestica HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 54.2
Medtr8g073920 Medicago truncatula HOM05D001927 ORTHO05D001972 1.1e-06 57.4 89 40.4
Psat4g104080 Pisum sativum HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 52.5
TWI09G0167 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 1.1e-06 57.4 59 55.9
Cfa005350 Carpinus fangiana HOM05D001927 ORTHO05D001972 1.4e-06 57.0 59 52.5
Thhalv10024813m.g Eutrema salsugineum HOM05D001927 ORTHO05D001972 1.4e-06 57.0 59 52.5
Os10g0542200 Oryza sativa ssp. japonica HOM05D001927 ORTHO05D001972 1.4e-06 57.0 59 52.5
Prupe.8G178100 Prunus persica HOM05D001927 ORTHO05D001972 1.4e-06 57.0 59 52.5
Aqoxy5G01032 Aquilegia oxysepala HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 49.2
MSTRG.19947 Avicennia marina HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 52.5
Ciclev10025307m.g Citrus clementina HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 50.8
COL.COLO4_22541 Corchorus olitorius HOM05D001927 ORTHO05D001972 1.9e-06 56.6 61 50.8
Eucgr.I01516 Eucalyptus grandis HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 50.8
PGR042G0581 Punica granatum HOM05D001927 ORTHO05D001972 1.9e-06 56.6 33 78.8
Sed0010207 Sechium edule HOM05D001927 ORTHO05D001972 1.9e-06 56.6 33 81.8
SGA_v2.0_scaffold32G13343 Striga asiatica HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 52.5
SGA_v2.0_scaffold58G20316 Striga asiatica HOM05D001927 ORTHO05D001972 1.9e-06 56.6 59 52.5
Cfa007067 Carpinus fangiana HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 52.5
Haze_03670 Corylus avellana HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 52.5
Medtr5g023830 Medicago truncatula HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 54.2
Nitab4.5_0000467g0010 Nicotiana tabacum HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 55.9
Nitab4.5_0002850g0080 Nicotiana tabacum HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 55.9
Potri.004G205100 Populus trichocarpa HOM05D001927 ORTHO05D001972 2.4e-06 56.2 59 54.2
Hund00361 Selenicereus undatus HOM05D001927 ORTHO05D001972 2.4e-06 56.2 70 48.6
Sc08g0002320 Simmondsia chinensis HOM05D001927 ORTHO05D001972 2.4e-06 56.2 58 53.4
arahy.Tifrunner.gnm1.ann1.4G73DJ Arachis hypogaea HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 52.5
A01p03270 Brassica napus HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 52.5
BolC1t00352H Brassica oleracea HOM05D001927 ORTHO05D001972 3.2e-06 55.8 58 53.4
ClCG02G003510 Citrullus lanatus HOM05D001927 ORTHO05D001972 3.2e-06 55.8 33 78.8
Cc07_g11700 Coffea canephora HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 54.2
MELO3C013259.2 Cucumis melo HOM05D001927 ORTHO05D001972 3.2e-06 55.8 33 78.8
CsaV3_7G001800 Cucumis sativus L. HOM05D001927 ORTHO05D001972 3.2e-06 55.8 33 78.8
Gohir.D03G002700 Gossypium hirsutum HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 49.2
Oeu062475.1 Olea europaea HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 52.5
Potri.005G100200 Populus trichocarpa HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 49.2
Sabra05G0082800 Salix brachista HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 49.2
TPR.G18300 Trifolium pratense HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 50.8
TWI75G1468 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 50.8
TAR376G0846 Trochodendron aralioides HOM05D001927 ORTHO05D001972 3.2e-06 55.8 59 54.2
arahy.Tifrunner.gnm1.ann1.IUYP8I Arachis hypogaea HOM05D001927 ORTHO05D001972 4.1e-06 55.5 33 78.8
arahy.Tifrunner.gnm1.ann1.JPCM7H Arachis hypogaea HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 52.5
arahy.Tifrunner.gnm1.ann1.P0RRHQ Arachis hypogaea HOM05D001927 ORTHO05D001972 4.1e-06 55.5 33 78.8
Ca_24968_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 54.2
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 4.1e-06 55.5 33 75.8
Duzib147G0366 Durio zibethinus HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 49.2
ECA246G0818 Erigeron canadensis HOM05D001927 ORTHO05D001972 4.1e-06 55.5 78 46.2
FvH4_2g16610 Fragaria vesca HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
FAN15G2394 Fragaria x ananassa HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
FAN20G1284 Fragaria x ananassa HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
FAN24G0005 Fragaria x ananassa HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
FAN27G0140 Fragaria x ananassa HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
Gohir.A04G125500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
Lj4g0010573 Lotus japonicus HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 52.5
Hund06166 Selenicereus undatus HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
TWI79G0496 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 4.1e-06 55.5 59 50.8
Actinidia17381 Actinidia chinensis HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 54.2
CAN.G890.80 Capsicum annuum HOM05D001927 ORTHO05D001972 5.4e-06 55.1 81 45.7
Lsat_1_v5_gn_3_48760 Lactuca sativa HOM05D001927 ORTHO05D001972 5.4e-06 55.1 69 44.9
Lj2g0024598 Lotus japonicus HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 52.5
MD10G1139400 Malus domestica HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 52.5
Manes.01G154200 Manihot esculenta HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 52.5
Manes.02G113000 Manihot esculenta HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 52.5
Nn6g31721 Nelumbo nucifera HOM05D001927 ORTHO05D001972 5.4e-06 55.1 33 72.7
Os03g0131300 Oryza sativa ssp. japonica HOM05D001927 ORTHO05D001972 5.4e-06 55.1 58 51.7
Peaxi162Scf00580g00419 Petunia axillaris HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 54.2
Phvul.003G269300 Phaseolus vulgaris HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 50.8
RcHm_v2.0_Chr6g0280671 Rosa chinensis HOM05D001927 ORTHO05D001972 5.4e-06 55.1 59 49.2
AL3G50060 Arabidopsis lyrata HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 52.5
AT2G17200 Arabidopsis thaliana HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 52.5
CSS0019927 Camellia sinensis var. sinensis HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 49.2
Duzib187G0987 Durio zibethinus HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 49.2
Oeu021982.1 Olea europaea HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 49.2
Psat2g149480 Pisum sativum HOM05D001927 ORTHO05D001972 7.0e-06 54.7 58 55.2
PGR142G3843 Punica granatum HOM05D001927 ORTHO05D001972 7.0e-06 54.7 66 47.0
RcHm_v2.0_Chr2g0097401 Rosa chinensis HOM05D001927 ORTHO05D001972 7.0e-06 54.7 33 75.8
PGSC0003DMG400017491 Solanum tuberosum HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 52.5
TWI31G0016 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 50.8
unitig_899.g15613 Utricularia gibba HOM05D001927 ORTHO05D001972 7.0e-06 54.7 33 75.8
VMungo0251G2413 Vigna mungo HOM05D001927 ORTHO05D001972 7.0e-06 54.7 59 49.2
Actinidia20567 Actinidia chinensis HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 49.2
Carub.0003s3114 Capsella rubella HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 52.5
CARHR293500 Cardamine hirsuta HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 50.8
Ca_22419_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 50.8
Gohir.A02G177200 Gossypium hirsutum HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 47.5
Gorai.003G002900 Gossypium raimondii HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 47.5
PSO541G2185 Papaver somniferum HOM05D001927 ORTHO05D001972 9.2e-06 54.3 58 51.7
PSO675G1621 Papaver somniferum HOM05D001927 ORTHO05D001972 9.2e-06 54.3 58 51.7
QL06p052823 Quercus lobata HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 52.5
QL06p053755 Quercus lobata HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 52.5
Solyc02g082800.3 Solanum lycopersicum HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 54.2
Sopen02g027600 Solanum pennellii HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 54.2
PGSC0003DMG400001571 Solanum tuberosum HOM05D001927 ORTHO05D001972 9.2e-06 54.3 59 54.2


User provided reference genes

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