Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550931 Helianthus annuus HOM05D003321 ORTHO05D224906 1.6e-88 329.3 161 100.0
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 1.0e-26 124.0 75 84.0
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.5e-25 119.4 75 80.0
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 3.3e-25 119.0 75 80.0
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 7.4e-25 117.9 66 87.9
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 1.3e-24 117.1 75 77.3
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 4.8e-24 115.2 75 77.3
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 4.8e-24 115.2 75 77.3
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 8.2e-24 114.4 75 74.7
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 1.8e-23 113.2 75 72.0
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 1.8e-23 113.2 75 76.0
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 4.1e-23 112.1 75 74.7
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 6.9e-23 111.3 75 73.3
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 6.9e-23 111.3 75 73.3
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 9.1e-23 110.9 75 72.0
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 9.1e-23 110.9 75 72.0
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 1.5e-22 110.2 75 72.0
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.5e-22 110.2 75 72.0
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.5e-22 110.2 75 72.0
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.5e-22 110.2 75 72.0
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 1.5e-22 110.2 75 72.0
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 2.0e-22 109.8 75 74.7
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 2.6e-22 109.4 75 72.0
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 4.5e-22 108.6 75 72.0
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.5e-22 108.6 75 72.0
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.5e-22 108.6 75 72.0
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 4.5e-22 108.6 75 72.0
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 5.9e-22 108.2 75 69.3
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 7.7e-22 107.8 75 70.7
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.0e-21 107.5 75 69.3
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 1.0e-21 107.5 75 70.7
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.0e-21 107.5 75 69.3
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 1.3e-21 107.1 74 71.6
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.3e-21 107.1 75 70.7
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 1.7e-21 106.7 75 72.0
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.9e-21 105.9 75 69.3
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 2.9e-21 105.9 75 70.7
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 2.9e-21 105.9 75 70.7
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 2.9e-21 105.9 75 69.3
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 3.8e-21 105.5 75 69.3
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 3.8e-21 105.5 75 72.0
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 3.8e-21 105.5 75 68.0
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 5.0e-21 105.1 75 68.0
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 5.0e-21 105.1 75 69.3
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 5.0e-21 105.1 75 69.3
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 5.0e-21 105.1 75 68.0
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.5e-21 104.8 75 69.3
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 6.5e-21 104.8 77 71.4
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 6.5e-21 104.8 75 66.7
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 8.5e-21 104.4 75 69.3
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 8.5e-21 104.4 75 65.3
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 8.5e-21 104.4 75 68.0
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.1e-20 104.0 75 69.3
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.1e-20 104.0 75 69.3
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 68.0
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 69.3
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 69.3
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 66.7
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 68.0
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 68.0
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 1.4e-20 103.6 75 66.7
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 1.9e-20 103.2 75 66.7
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 2.5e-20 102.8 75 64.0
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.5e-20 102.8 75 68.0
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 2.5e-20 102.8 75 66.7
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 2.5e-20 102.8 75 69.3
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 2.5e-20 102.8 75 66.7
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 3.2e-20 102.4 75 68.0
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 3.2e-20 102.4 75 66.7
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 3.2e-20 102.4 75 66.7
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 3.2e-20 102.4 75 68.0
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 66.7
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 66.7
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 66.7
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 66.7
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 68.0
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.2e-20 102.1 75 68.0
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 5.5e-20 101.7 75 66.7
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 7.2e-20 101.3 75 66.7
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 7.2e-20 101.3 75 66.7
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 7.2e-20 101.3 75 65.3
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 7.2e-20 101.3 68 73.5
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 7.2e-20 101.3 75 69.3
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 7.2e-20 101.3 75 65.3
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 1.2e-19 100.5 75 64.0
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 1.2e-19 100.5 75 64.0
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 1.2e-19 100.5 71 70.4
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 1.2e-19 100.5 75 64.0
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.6e-19 100.1 75 64.0
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 2.1e-19 99.8 75 68.0
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 2.1e-19 99.8 75 64.0
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 2.7e-19 99.4 75 64.0
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 2.7e-19 99.4 75 66.7
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.7e-19 99.4 75 64.0
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 2.7e-19 99.4 75 65.3
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 2.7e-19 99.4 75 61.3
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 3.6e-19 99.0 75 61.3
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 3.6e-19 99.0 75 65.3
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 6.1e-19 98.2 82 62.2
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 6.1e-19 98.2 82 62.2
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 6.1e-19 98.2 82 62.2
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 6.1e-19 98.2 82 62.2
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 6.1e-19 98.2 82 62.2
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 7.9e-19 97.8 75 64.0
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 7.9e-19 97.8 75 62.7
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.0e-18 97.4 75 62.7
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 1.0e-18 97.4 68 70.6
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.0e-18 97.4 75 64.0
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 1.0e-18 97.4 75 64.0
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.4e-18 97.1 82 61.0
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 1.4e-18 97.1 75 62.7
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 1.8e-18 96.7 82 61.0
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 1.8e-18 96.7 75 65.3
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 1.8e-18 96.7 75 64.0
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 1.8e-18 96.7 75 62.7
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 3.0e-18 95.9 82 59.8
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-18 95.9 82 59.8
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.0e-18 95.9 82 59.8
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.0e-18 95.9 82 59.8
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 3.9e-18 95.5 82 59.8
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 5.1e-18 95.1 75 62.7
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 8.8e-18 94.4 82 58.5
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.1e-17 94.0 75 60.0
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 1.1e-17 94.0 75 62.7
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 1.5e-17 93.6 75 62.7
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 3.3e-17 92.4 73 64.4
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 4.4e-17 92.0 75 60.0
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 4.4e-17 92.0 75 65.3
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 9.7e-17 90.9 75 58.7
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 9.7e-17 90.9 75 58.7
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.3e-16 90.5 75 60.0
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.7e-16 90.1 75 57.3
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 2.2e-16 89.7 75 58.7
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 4.8e-16 88.6 75 56.0
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 8.2e-16 87.8 75 57.3
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 1.1e-15 87.4 75 56.0
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.4e-15 87.0 75 57.3
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 1.8e-15 86.7 75 56.0
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 2.4e-15 86.3 75 56.0
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.1e-15 85.9 68 58.8
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 3.1e-15 85.9 75 56.0
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 3.1e-15 85.9 75 56.0
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 3.1e-15 85.9 75 56.0
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 4.1e-15 85.5 75 54.7
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 1.2e-14 84.0 39 100.0
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 7.7e-14 81.3 75 56.0
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 3.8e-13 79.0 37 100.0
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.8e-13 79.0 69 56.5
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.4e-12 77.0 75 52.0
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 1.9e-12 76.6 73 50.7
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 7.2e-12 74.7 75 49.3
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 2.7e-11 72.8 75 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 8.0e-11 71.2 75 46.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.2e-10 68.6 71 50.7
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 6.7e-10 68.2 74 45.9
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 9.7e-09 64.3 37 81.1
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 1.3e-08 63.9 37 75.7
ECA234G4637 Erigeron canadensis HOM05D003321 ORTHO05D008593 1.8e-07 60.1 78 46.2
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 2.6e-06 56.2 25 100.0
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 2.6e-06 56.2 25 100.0
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 4.5e-06 55.5 36 69.4
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 4.5e-06 55.5 32 78.1


User provided reference genes

Program Settings