Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0550251 Helianthus annuus HOM05D001092 ORTHO05D000923 1.9e-22 108.2 51 100.0
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 1.6e-21 105.1 50 98.0
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 7.8e-21 102.8 50 94.0
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 1.2e-18 95.5 50 88.0
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 1.6e-18 95.1 50 84.0
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 2.1e-18 94.7 50 84.0
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 2.8e-18 94.4 50 82.0
Migut.E00810 Erythranthe guttata HOM05D001092 ORTHO05D000923 2.8e-18 94.4 50 82.0
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.6e-18 94.0 50 84.0
CSS0002593 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 4.7e-18 93.6 50 84.0
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 4.7e-18 93.6 50 82.0
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 4.0e-17 90.5 50 82.0
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 4.0e-17 90.5 50 82.0
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 5.2e-17 90.1 49 83.7
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 5.2e-17 90.1 49 83.7
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 5.2e-17 90.1 50 78.0
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 8.9e-17 89.4 50 80.0
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
Solyc08g077500.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 1.2e-16 89.0 50 80.0
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 1.5e-16 88.6 50 78.0
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 1.5e-16 88.6 50 78.0
Rhsim11G0008300 Rhododendron simsii HOM05D001092 ORTHO05D000923 1.5e-16 88.6 50 80.0
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 4.4e-16 87.0 50 76.0
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 4.4e-16 87.0 50 78.0
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 4.4e-16 87.0 50 76.0
ClCG09G012520 Citrullus lanatus HOM05D001092 ORTHO05D000923 7.6e-16 86.3 50 76.0
Gohir.A03G003300 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 1.3e-15 85.5 50 76.0
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 1.7e-15 85.1 50 74.0
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 1.7e-15 85.1 50 78.0
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 2.2e-15 84.7 50 76.0
Ah.12g053800 Amaranthus hybridus HOM05D001092 ORTHO05D000923 2.9e-15 84.3 50 74.0
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 2.9e-15 84.3 50 74.0
SGA_v2.0_scaffold20G09243 Striga asiatica HOM05D001092 ORTHO05D000923 2.9e-15 84.3 50 76.0
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 2.9e-15 84.3 50 74.0
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 3.8e-15 84.0 50 74.0
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 3.8e-15 84.0 50 74.0
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 4.9e-15 83.6 50 74.0
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 4.9e-15 83.6 50 72.0
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 4.9e-15 83.6 50 74.0
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 4.9e-15 83.6 50 74.0
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 4.9e-15 83.6 50 74.0
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 6.4e-15 83.2 50 74.0
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 8.4e-15 82.8 50 72.0
Gohir.D08G181600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 8.4e-15 82.8 50 74.0
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 1.1e-14 82.4 50 72.0
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.1e-14 82.4 56 67.9
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 1.1e-14 82.4 50 74.0
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 1.1e-14 82.4 50 72.0
HPP92_014924 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.1e-14 82.4 50 74.0
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.4e-14 82.0 50 72.0
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.4e-14 82.0 50 72.0
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 1.9e-14 81.6 50 70.0
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 1.9e-14 81.6 50 72.0
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 1.9e-14 81.6 50 74.0
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 2.4e-14 81.3 50 72.0
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 2.4e-14 81.3 50 74.0
HPP92_014931 Vanilla planifolia HOM05D001092 ORTHO05D000923 3.2e-14 80.9 50 72.0
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 5.4e-14 80.1 50 72.0
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 5.4e-14 80.1 50 70.0
Zm00001eb390790 Zea mays HOM05D001092 ORTHO05D000923 5.4e-14 80.1 50 70.0
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 7.1e-14 79.7 50 68.0
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 9.2e-14 79.3 50 72.0
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 9.2e-14 79.3 50 68.0
CDE02G1948 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 2.7e-13 77.8 50 70.0
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 3.5e-13 77.4 50 70.0
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 6.0e-13 76.6 50 68.0
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 7.8e-13 76.3 50 68.0
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 7.8e-13 76.3 50 68.0
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 7.8e-13 76.3 50 68.0
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 7.8e-13 76.3 50 68.0
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 7.8e-13 76.3 50 68.0
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 1.0e-12 75.9 50 68.0
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.7e-12 75.1 50 66.0
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.3e-12 74.7 50 66.0
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 3.9e-12 73.9 50 62.0
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 1.1e-11 72.4 50 60.0
Oeu033911.2 Olea europaea HOM05D001092 ORTHO05D000923 8.1e-10 66.2 94 41.5
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 2.0e-08 61.6 30 93.3
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 2.0e-08 61.6 50 52.0
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 9.9e-08 59.3 50 48.0
SMO240G0011 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 1.3e-07 58.9 48 52.1
SMO340G0042 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 1.3e-07 58.9 48 52.1
EL10Ac6g15714 Beta vulgaris HOM05D001092 ORTHO05D000923 1.7e-07 58.5 50 48.0
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 1.7e-07 58.5 50 50.0
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 2.2e-07 58.2 50 50.0
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 2.2e-07 58.2 50 48.0
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 2.2e-07 58.2 50 48.0
Haze_00818 Corylus avellana HOM05D001092 ORTHO05D000923 3.8e-07 57.4 50 48.0
Nitab4.5_0006135g0040 Nicotiana tabacum HOM05D001092 ORTHO05D000923 3.8e-07 57.4 30 80.0
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 3.8e-07 57.4 50 48.0
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
FAN17G2279 Fragaria x ananassa HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
PGR004G1484 Punica granatum HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
RcHm_v2.0_Chr4g0426501 Rosa chinensis HOM05D001092 ORTHO05D000923 4.9e-07 57.0 50 48.0
SHI07566 Sapria himalayana HOM05D001092 ORTHO05D000923 4.9e-07 57.0 103 35.0
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 6.4e-07 56.6 50 50.0
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 6.4e-07 56.6 54 48.1
Atru.chr4.3074 Acer truncatum HOM05D001092 ORTHO05D000923 8.4e-07 56.2 50 48.0
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 8.4e-07 56.2 50 46.0
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 8.4e-07 56.2 30 80.0
PSO210G3521 Papaver somniferum HOM05D001092 ORTHO05D000923 8.4e-07 56.2 50 48.0
PSO761G0196 Papaver somniferum HOM05D001092 ORTHO05D000923 8.4e-07 56.2 50 48.0
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 1.1e-06 55.8 50 48.0
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 1.1e-06 55.8 50 48.0
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 1.1e-06 55.8 50 46.0
HanXRQChr01g0031031 Helianthus annuus HOM05D001092 ORTHO05D000923 1.1e-06 55.8 48 47.9
Lj6C698G8 Lonicera japonica HOM05D001092 ORTHO05D000923 1.1e-06 55.8 50 46.0
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 1.1e-06 55.8 48 47.9
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 1.1e-06 55.8 50 48.0
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 48.0
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 48.0
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 48.0
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 48.0
Lalb_Chr12g0200731 Lupinus albus HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 48.0
Nn2g14501 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 46.0
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.4e-06 55.5 50 46.0
Pp3c9_20320 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.4e-06 55.5 48 50.0
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.9e-06 55.1 50 46.0
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 1.9e-06 55.1 50 46.0
Ca_30453_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.4e-06 54.7 35 68.6
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 2.4e-06 54.7 50 46.0
DCAR_023379 Daucus carota HOM05D001092 ORTHO05D000923 2.4e-06 54.7 48 47.9
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 2.4e-06 54.7 50 48.0
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 2.4e-06 54.7 50 46.0
TWI73G1237 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 2.4e-06 54.7 50 46.0
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BcaB07g33792 Brassica carinata HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
Dinv29544 Davidia involucrata HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 44.0
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
Gohir.A10G175901 Gossypium hirsutum HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 48.0
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 48.0
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 3.2e-06 54.3 50 46.0
AagrBONN_evm.TU.Sc2ySwM_362.1818 Anthoceros agrestis HOM05D001092 ORTHO05D000923 4.2e-06 53.9 48 50.0
Lalb_Chr13g0298791 Lupinus albus HOM05D001092 ORTHO05D000923 4.2e-06 53.9 50 46.0
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 4.2e-06 53.9 30 76.7
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.2e-06 53.9 54 48.1
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.2e-06 53.9 54 48.1
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 4.2e-06 53.9 50 42.0
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 5.4e-06 53.5 50 46.0
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 5.4e-06 53.5 30 76.7
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 5.4e-06 53.5 30 76.7
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 5.4e-06 53.5 50 48.0
MD16G1145300 Malus domestica HOM05D001092 ORTHO05D000923 5.4e-06 53.5 50 44.0
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 5.4e-06 53.5 50 44.0
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 5.4e-06 53.5 50 46.0
Aqoxy4G01582 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 7.1e-06 53.1 50 44.0
COL.COLO4_34530 Corchorus olitorius HOM05D001092 ORTHO05D000923 7.1e-06 53.1 50 46.0
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 7.1e-06 53.1 50 46.0
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 7.1e-06 53.1 50 46.0
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 44.0
MSTRG.3839 Avicennia marina HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 42.0
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 9.3e-06 52.8 48 45.8
Mapoly0076s0036 Marchantia polymorpha HOM05D001092 ORTHO05D000923 9.3e-06 52.8 48 50.0
Psat0s45g0120 Pisum sativum HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 44.0
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 44.0
QL06p013529 Quercus lobata HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 44.0
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 46.0
TAR362G0616 Trochodendron aralioides HOM05D001092 ORTHO05D000923 9.3e-06 52.8 50 46.0


User provided reference genes

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