Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 2083.1 1076 100.0
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1885.9 1085 88.8
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1830.8 1079 88.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1685.6 1076 78.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1076 77.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1649.4 1078 76.7
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1640.6 1075 76.7
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1634.4 1076 76.1
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1628.6 1100 76.3
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1626.7 1080 76.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1620.5 1081 74.9
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1618.2 1076 76.5
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1617.4 1076 75.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1077 75.4
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1615.5 1009 78.1
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1614.4 1080 74.5
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1611.3 1084 74.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1605.1 1076 74.1
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1600.9 1151 72.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1598.9 1078 74.9
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1595.1 1086 74.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1591.6 1086 74.2
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1590.1 1079 74.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1589.3 1079 74.6
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1588.5 1076 74.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1588.2 1076 73.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1077 74.0
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1582.0 1081 73.5
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1579.7 1076 73.0
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1578.1 1122 73.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1574.7 1110 72.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1573.9 1084 73.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1082 73.3
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1562.0 1076 73.2
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1553.9 1084 72.2
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 997 76.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 1073 72.8
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1078 72.4
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1540.0 1089 71.2
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1539.2 1077 71.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1077 73.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1538.1 1076 72.8
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1538.1 1080 71.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1533.1 1077 72.7
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1532.7 1165 68.6
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1532.3 1077 71.0
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1527.7 1089 72.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1519.6 1077 70.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1518.1 1077 72.5
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1516.5 971 76.8
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1515.0 965 78.3
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1513.8 1073 71.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1513.8 1078 71.2
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1506.5 1076 71.0
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1503.0 978 77.6
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1497.6 1077 69.7
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1497.3 954 79.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1493.0 1079 71.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1486.5 1103 70.6
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1479.2 1002 74.0
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1477.6 1084 70.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1476.1 1002 73.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1472.2 1104 68.1
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1469.9 948 77.2
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1469.1 1082 70.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1468.0 1102 68.9
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1465.3 1083 70.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1457.2 998 73.0
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1457.2 947 76.5
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1454.5 1226 63.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1454.5 988 72.4
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1425.6 1016 70.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1424.8 1043 68.0
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1410.2 1079 67.4
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1408.7 1031 67.4
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1367.1 1198 61.9
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1342.0 978 68.1
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1318.1 1126 62.9
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1279.6 868 74.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1275.0 970 69.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1262.3 1032 62.4
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1257.7 1098 62.2
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1257.7 886 72.0
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1252.3 1031 60.4
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1236.1 1002 62.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1162.5 1030 55.8
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1139.0 1136 56.1
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1084.3 1101 55.5
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 9.5e-310 1067.0 1056 53.6
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 5.4e-305 1051.2 668 78.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.2e-291 1006.9 751 67.0
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.7e-290 1003.0 1022 52.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 5.4e-289 998.0 1032 51.1
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 5.6e-286 988.0 1004 53.8
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 6.5e-250 868.2 588 74.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 9.3e-249 864.4 620 69.8
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 4.5e-235 818.9 584 69.5
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 3.6e-208 729.6 508 72.6
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 2.5e-201 706.8 518 69.9
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.8e-196 690.6 472 72.7
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.9e-193 680.6 619 59.6
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-185 654.8 818 49.4
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.4e-182 642.9 459 69.9
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.9e-169 600.9 628 54.5
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.1e-168 597.4 410 72.0
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.1e-163 580.9 389 75.8
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 6.2e-152 542.7 397 68.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.0e-151 540.0 362 78.2
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.2e-131 475.3 344 73.3
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 4.3e-129 466.8 326 72.4
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.4e-127 461.8 285 78.9
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.1e-127 459.1 316 76.9
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 5.5e-124 449.9 392 62.5
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 9.7e-113 412.5 294 68.7
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.5e-109 399.8 819 36.4
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.5e-102 377.5 215 82.8
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.5e-94 350.5 241 71.4
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.3e-80 305.8 292 50.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.1e-79 302.8 226 68.1
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.0e-78 298.5 174 89.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 5.2e-58 230.7 178 69.1
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.9e-56 224.9 203 66.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.4e-55 221.9 142 77.5
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.4e-50 205.3 188 60.6
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.7e-45 189.1 150 62.0
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 3.3e-44 184.9 99 96.0
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 8.4e-40 170.2 100 86.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 3.9e-37 161.4 84 95.2
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 9.6e-36 156.8 105 73.3
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.1e-34 153.3 130 56.9
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-34 152.9 112 64.3
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 4.0e-34 151.4 148 52.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 6.9e-34 150.6 137 55.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 5.5e-31 141.0 90 72.2
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.0e-26 124.8 130 60.8
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.0e-26 124.8 130 60.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.2e-25 123.2 103 56.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-23 116.3 92 60.9
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.2e-22 113.2 136 52.2
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 3.9e-21 108.2 197 36.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.1e-20 106.7 73 68.5
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 5.9e-17 94.4 54 83.3
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.3e-16 93.2 69 66.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.8e-16 91.7 69 63.8
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.0e-13 83.6 137 41.6
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.7e-11 76.3 51 68.6
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.1e-10 72.0 59 62.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 6.9e-10 70.9 55 61.8
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.2e-06 60.1 29 86.2
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-06 59.7 37 67.6


User provided reference genes

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