Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 2321.6 1175 100.0
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1912.9 1173 82.5
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1850.5 1176 80.6
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1481.8 1179 65.4
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1426.8 1181 63.0
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1409.0 1179 60.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1401.0 1181 61.2
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1370.1 1169 62.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1369.0 1182 58.4
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1181 59.1
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1359.7 1188 57.8
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1354.3 1171 59.3
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1351.3 1182 57.3
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1347.8 1175 59.6
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1178 58.5
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1169 59.2
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1345.9 1182 57.3
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1183 58.3
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1336.2 1179 59.7
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1330.1 1189 58.8
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1330.1 1131 59.8
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1327.8 1180 58.0
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1310.4 1398 50.6
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1306.6 1393 52.8
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1305.8 1184 58.3
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1297.3 1222 54.5
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1296.6 1197 55.9
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1293.9 1182 55.5
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1290.8 1181 55.3
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1181 56.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1278.1 1179 55.2
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1275.0 1187 56.2
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1271.5 1182 54.6
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1269.6 1187 54.9
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1265.0 1162 54.8
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1261.1 1187 54.4
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1260.0 1179 55.7
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1258.0 1185 55.0
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1256.1 1194 54.7
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1178 55.6
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1252.7 1178 55.5
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1251.1 1180 56.6
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1184 54.4
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1185 55.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1242.6 1178 54.8
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1240.3 1166 54.1
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1239.6 1175 55.1
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1239.2 1180 53.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1234.6 1166 53.9
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1233.0 1206 52.7
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1231.5 1162 53.8
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1231.5 1138 56.8
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1231.1 1180 53.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1228.8 1163 54.1
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1227.2 1164 54.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1225.3 1164 54.0
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1225.3 1175 54.6
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1223.4 1175 54.5
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1217.2 1179 56.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1216.8 1162 53.6
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1215.7 1163 53.5
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1215.7 1166 53.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1213.4 1178 54.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1209.5 1166 53.8
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1197.2 1167 53.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1181.0 1169 52.6
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1177.2 1169 51.9
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1176.4 1214 51.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1174.5 1169 52.4
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1169.5 1166 52.1
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1165.2 1169 51.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1153.3 1166 53.1
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1151.0 1112 55.5
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1135.6 1056 55.9
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1132.1 1182 51.0
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1130.5 1063 54.6
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1125.2 1040 56.4
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1100.9 1186 48.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1087.8 1172 49.3
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 8.8e-309 1063.9 1210 48.8
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 4.1e-306 1055.0 1186 47.8
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.4e-298 1030.0 1123 48.9
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 4.2e-295 1018.5 837 63.8
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 4.5e-289 998.4 1181 44.7
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 6.5e-288 994.6 1159 48.1
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.5e-281 972.2 761 67.4
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 7.2e-279 964.5 1179 44.0
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.5e-273 945.7 1110 47.7
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.2e-235 820.1 1095 44.7
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 5.6e-223 778.9 783 52.4
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.2e-210 736.5 719 54.7
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.5e-204 717.6 792 50.9
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.6e-196 690.3 682 56.0
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 8.5e-179 632.1 1201 34.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 4.0e-168 596.7 1202 33.4
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 5.9e-156 556.2 430 64.7
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.0e-139 502.3 458 55.7
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.3e-139 501.1 634 45.1
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.0e-123 449.1 1119 30.5
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 7.6e-119 433.0 392 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.9e-117 428.3 832 32.9
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.9e-114 418.3 406 53.4
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.1e-96 357.5 424 45.3
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-93 348.6 529 36.3
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 2.8e-89 334.7 303 54.8
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.2e-84 319.3 218 71.1
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-69 268.9 1128 25.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.6e-68 265.8 186 68.8
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 7.2e-61 240.4 204 56.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.4e-48 199.5 252 44.0
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 3.1e-48 198.4 177 58.8
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.0e-47 195.7 199 52.8
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.0e-30 137.9 121 59.5
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 5.2e-27 127.9 157 42.0
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.8e-20 105.5 326 26.1
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 5.8e-18 97.8 501 23.2
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.1e-16 93.6 359 24.5
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 9.2e-16 90.5 107 49.5
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 5.1e-14 84.7 58 67.2
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 5.2e-11 74.7 53 69.8
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 6.9e-11 74.3 53 64.2
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 7.6e-10 70.9 59 55.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.7e-09 69.7 66 53.0
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 4.9e-09 68.2 48 64.6
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.1e-08 67.0 48 64.6
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 3.5e-07 62.0 57 52.6
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.0e-06 60.5 48 58.3
Lsat_1_v5_gn_1_73681 Lactuca sativa HOM05D001179 ORTHO05D003685 1.3e-06 60.1 37 75.7
TAR365G1006 Trochodendron aralioides HOM05D001130 ORTHO05D001052 2.3e-06 59.3 163 27.6


User provided reference genes

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