Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 0.0e+00 1456.0 833 100.0
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-207 726.5 860 55.7
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.4e-204 716.5 937 52.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-203 713.8 903 53.4
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 4.3e-201 705.7 882 54.0
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.5e-198 695.7 872 53.6
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.0e-194 684.5 861 53.0
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 1.3e-194 684.1 875 52.7
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-194 683.7 836 57.1
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 8.7e-194 681.4 876 51.4
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-193 681.0 935 50.2
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 2.8e-192 676.4 606 66.7
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.1e-191 674.5 879 51.2
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 2.4e-191 673.3 892 51.6
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 6.9e-191 671.8 910 51.3
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.4e-189 665.2 898 50.7
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 6.4e-189 665.2 952 50.5
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.4e-188 664.1 927 49.3
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.9e-188 663.7 881 51.1
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 7.1e-188 661.8 939 48.5
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.6e-187 660.6 940 49.9
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 7.9e-187 658.3 938 48.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.5e-185 654.1 948 49.8
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.9e-185 653.7 894 50.1
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.9e-185 653.7 943 50.3
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 3.3e-185 652.9 881 51.3
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 5.6e-185 652.1 891 49.5
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 5.6e-185 652.1 896 50.3
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 7.4e-185 651.7 926 48.5
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 9.6e-185 651.4 911 50.9
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 9.6e-185 651.4 896 49.2
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.3e-184 651.0 884 49.3
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.6e-184 650.6 883 49.0
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.1e-184 650.2 876 50.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.8e-184 649.0 955 49.6
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 6.2e-184 648.7 871 50.2
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 8.2e-184 648.3 889 48.8
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.4e-183 647.5 906 48.8
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.4e-183 647.5 881 49.8
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.8e-183 647.1 885 49.4
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 5.3e-183 645.6 894 50.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 9.0e-183 644.8 867 51.9
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 9.0e-183 644.8 871 50.1
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.2e-182 644.4 875 50.2
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 1.2e-182 644.4 896 49.8
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.2e-182 644.4 898 50.0
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.6e-182 643.3 874 53.5
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 4.5e-182 642.5 890 49.4
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 7.6e-182 641.7 870 49.8
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 7.6e-182 641.7 908 48.8
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.6e-182 641.7 870 53.2
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.2e-181 640.2 867 50.2
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.2e-181 640.2 872 53.0
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 3.8e-181 639.4 911 49.5
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.9e-180 637.1 848 51.8
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 4.2e-180 636.0 911 49.3
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 4.2e-180 636.0 942 47.2
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 7.1e-180 635.2 894 48.7
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.6e-179 634.0 939 47.4
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.1e-179 633.6 865 50.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.7e-179 633.3 882 50.2
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 3.5e-179 632.9 951 49.0
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 6.0e-179 632.1 908 48.8
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.0e-179 632.1 898 48.6
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.0e-178 631.3 869 50.1
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.3e-178 630.9 895 49.6
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.5e-177 627.5 879 50.3
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.5e-177 627.5 890 48.4
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 4.3e-177 625.9 906 48.1
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 5.7e-177 625.5 896 49.6
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.7e-177 625.5 881 50.2
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 7.4e-177 625.2 891 49.7
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 3.7e-176 622.9 884 48.3
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 6.3e-176 622.1 897 51.2
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.1e-175 621.3 920 49.0
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.8e-175 620.5 884 49.9
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 9.0e-175 618.2 864 49.4
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.5e-174 617.5 909 46.6
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.6e-174 616.7 906 48.6
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.5e-174 615.9 911 47.7
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 3.8e-173 612.8 943 46.3
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.0e-173 612.5 926 48.1
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 9.3e-172 608.2 935 46.8
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.2e-171 607.8 896 51.3
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.1e-171 605.5 917 47.7
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 7.9e-171 605.1 862 48.8
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 1.0e-170 604.7 903 47.0
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 1.3e-170 604.4 881 50.1
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 5.1e-170 602.4 900 47.9
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 1.1e-169 601.3 884 48.3
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.5e-169 600.9 748 51.5
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 2.5e-169 600.1 748 51.7
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 5.7e-169 599.0 872 48.9
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 7.4e-169 598.6 932 46.5
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 7.4e-169 598.6 905 47.8
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 7.4e-169 598.6 912 46.5
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 1.3e-168 597.8 936 46.5
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 6.9e-167 592.0 942 45.5
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.6e-166 590.1 905 47.6
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 3.4e-166 589.7 872 48.6
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 5.9e-166 589.0 914 46.2
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 7.7e-166 588.6 1075 43.0
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.3e-165 587.8 931 45.5
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 2.9e-165 586.6 955 44.7
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 9.4e-164 581.6 899 48.5
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.2e-163 581.3 899 48.9
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.7e-163 580.1 930 45.3
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 1.4e-162 577.8 869 47.6
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.4e-162 577.8 881 47.2
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 9.1e-159 565.1 871 46.8
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.5e-158 564.3 932 45.5
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.9e-156 557.4 929 44.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 5.5e-156 555.8 951 45.7
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 2.7e-155 553.5 939 44.0
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 4.8e-152 542.7 919 44.1
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 5.9e-150 535.8 960 43.9
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.4e-145 519.6 786 48.5
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.8e-143 514.2 901 47.2
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 9.1e-143 511.9 949 44.5
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.9e-134 482.6 756 46.8
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.3e-133 480.7 980 38.7
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.0e-126 457.6 853 39.0
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 4.1e-119 433.3 864 39.6
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.6e-115 421.4 391 63.7
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.4e-106 391.7 457 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 6.0e-102 376.3 526 48.9
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 6.0e-102 376.3 596 44.6
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.9e-72 277.7 306 56.2
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 6.0e-62 243.4 912 28.6
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 8.8e-53 213.0 491 39.7
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 7.4e-52 209.9 446 41.0
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.5e-47 193.7 294 47.3
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 3.3e-44 184.5 322 41.9
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 3.5e-41 174.5 137 70.8
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 4.8e-35 154.1 424 32.8
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 1.1e-31 142.9 258 39.9
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.4e-29 136.0 337 33.8
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.8e-29 135.6 125 65.6
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 4.4e-28 131.0 119 64.7
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 8.3e-27 126.7 84 82.1
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.5e-25 121.3 242 39.7
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 8.5e-24 116.7 90 75.6
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 1.5e-23 115.9 88 72.7
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 9.8e-20 103.2 91 60.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.8e-19 101.7 107 56.1
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 4.8e-19 100.9 327 29.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 2.4e-18 98.6 488 28.1
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 5.4e-18 97.4 87 65.5
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.2e-17 96.3 89 65.2
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 2.7e-17 95.1 74 73.0
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.7e-17 95.1 111 50.5
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.7e-16 92.4 395 26.8
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 5.0e-16 90.9 351 29.3
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.1e-15 89.7 98 52.0
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.1e-15 89.7 422 29.6
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 7.2e-15 87.0 129 49.6
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.2e-14 86.3 60 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.1e-14 85.5 138 50.7
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.8e-14 85.1 71 71.8
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.7e-14 84.3 258 34.5
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 6.8e-13 80.5 368 27.4
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 2.6e-12 78.6 180 41.7
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.2e-11 75.5 97 52.6
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 3.7e-11 74.7 73 56.2
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 1.8e-10 72.4 78 53.8
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.6e-09 69.3 74 56.8
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.5e-09 68.2 377 27.1
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 3.5e-09 68.2 65 58.5
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 3.5e-09 68.2 65 58.5
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 4.5e-09 67.8 62 66.1
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 7.8e-09 67.0 78 50.0
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 3.9e-08 64.7 77 54.5
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 3.9e-08 64.7 47 74.5
ECA247G0580 Erigeron canadensis HOM05D008106 ORTHO05D010314 5.6e-07 60.8 132 35.6
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 2.1e-06 58.9 79 46.8


User provided reference genes

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