Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-65 252.7 125 100.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.5e-36 155.6 202 47.0
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 4.9e-32 141.4 204 44.1
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.4e-31 139.0 204 45.1
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 7.0e-31 137.5 115 65.2
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.2e-30 136.7 127 61.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.5e-30 135.2 126 60.3
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.5e-30 135.2 115 62.6
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.5e-30 134.8 126 60.3
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 8.6e-29 130.6 116 60.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.1e-28 130.2 111 62.2
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.5e-28 129.8 117 60.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.5e-28 129.0 117 59.8
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.3e-28 128.6 129 55.0
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.3e-28 128.6 115 60.9
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.3e-28 128.6 115 60.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.6e-28 127.9 101 64.4
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 9.5e-28 127.1 110 64.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 9.5e-28 127.1 98 64.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 1.2e-27 126.7 117 56.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.2e-27 126.7 114 59.6
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.6e-27 126.3 106 61.3
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.6e-27 126.3 108 61.1
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.1e-27 125.9 118 56.8
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.8e-27 125.6 116 58.6
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.7e-27 124.8 106 60.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 4.7e-27 124.8 106 60.4
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.7e-27 124.8 117 58.1
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.7e-27 124.8 199 39.2
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 4.7e-27 124.8 115 54.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.0e-26 123.6 101 63.4
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.4e-26 123.2 118 56.8
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.4e-26 123.2 122 53.3
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-26 123.2 122 53.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-26 123.2 122 53.3
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-26 123.2 122 53.3
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.8e-26 122.9 103 63.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.3e-26 122.5 103 65.0
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 2.3e-26 122.5 103 66.0
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 3.0e-26 122.1 114 57.0
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 4.0e-26 121.7 112 58.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 5.2e-26 121.3 114 57.0
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.2e-26 121.3 102 61.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 6.8e-26 120.9 124 53.2
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 8.9e-26 120.6 113 53.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 8.9e-26 120.6 122 50.8
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 8.9e-26 120.6 98 62.2
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 8.9e-26 120.6 118 56.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.2e-25 120.2 117 53.0
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.2e-25 120.2 127 56.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 2.0e-25 119.4 121 50.4
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 2.0e-25 119.4 124 55.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.6e-25 119.0 117 52.1
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.4e-25 118.2 129 51.9
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 4.4e-25 118.2 97 61.9
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 7.5e-25 117.5 114 56.1
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 7.5e-25 117.5 129 51.9
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 7.5e-25 117.5 103 59.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 7.5e-25 117.5 107 57.0
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 9.8e-25 117.1 98 56.1
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.7e-24 116.3 124 50.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.7e-24 116.3 97 56.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.7e-24 116.3 107 56.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.7e-24 116.3 107 56.1
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 3.7e-24 115.2 107 57.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.7e-24 115.2 118 50.8
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.1e-23 113.6 114 55.3
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.4e-23 112.5 100 53.0
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.4e-23 112.5 104 58.7
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.2e-23 112.1 108 52.8
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 3.2e-23 112.1 134 46.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 3.2e-23 112.1 117 48.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 9.2e-23 110.5 103 56.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 9.2e-23 110.5 95 56.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.2e-22 110.2 112 51.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-22 110.2 119 52.9
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-22 110.2 119 52.9
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.2e-22 110.2 110 51.8
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.2e-22 110.2 110 51.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.6e-22 109.8 105 52.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.5e-22 108.6 110 51.8
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 4.6e-22 108.2 107 53.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 7.8e-22 107.5 127 51.2
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 7.8e-22 107.5 127 51.2
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 7.8e-22 107.5 127 51.2
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.3e-21 106.7 115 52.2
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-21 106.3 110 53.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.3e-21 105.9 128 50.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 2.3e-21 105.9 202 36.1
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.3e-21 105.9 111 50.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.9e-21 105.1 129 47.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 5.0e-21 104.8 110 53.6
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 6.6e-21 104.4 112 49.1
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.6e-21 104.4 102 53.9
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.5e-20 103.2 115 47.0
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-20 103.2 195 35.4
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.5e-20 103.2 99 55.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.5e-20 103.2 195 35.4
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.9e-20 102.8 98 52.0
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.9e-20 102.8 113 49.6
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.5e-20 102.4 86 57.0
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 2.5e-20 102.4 126 49.2
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 3.3e-20 102.1 128 47.7
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.3e-20 101.7 113 44.2
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 4.3e-20 101.7 87 55.2
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.6e-20 101.3 112 49.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.6e-20 101.3 126 48.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.6e-20 101.3 196 35.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.6e-20 101.3 110 50.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 9.5e-20 100.5 112 47.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.2e-19 100.1 117 45.3
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-19 99.8 98 49.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.6e-19 99.8 99 54.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.6e-19 99.8 115 47.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.1e-19 99.4 98 52.0
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.6e-19 98.6 112 48.2
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.6e-19 98.6 92 53.3
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.7e-19 98.2 113 43.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 4.7e-19 98.2 107 47.7
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 8.0e-19 97.4 101 47.5
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.1e-18 97.1 117 44.4
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.1e-18 97.1 97 50.5
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.4e-18 96.7 107 48.6
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.8e-18 96.3 98 48.0
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 4.0e-18 95.1 98 48.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-18 94.7 87 48.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-18 94.7 85 49.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 5.2e-18 94.7 87 48.3
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 6.8e-18 94.4 84 50.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.9e-18 94.0 85 49.4
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-17 93.6 86 48.8
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.2e-17 93.6 110 46.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-17 92.8 99 45.5
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.0e-17 92.8 99 45.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-17 92.4 98 45.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.6e-17 92.4 118 39.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 5.8e-17 91.3 114 48.2
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.5e-17 90.9 66 66.7
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 7.5e-17 90.9 99 48.5
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.3e-16 90.1 135 42.2
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-16 90.1 99 44.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.1e-15 87.0 164 33.5
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.4e-15 85.9 98 45.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.2e-15 85.5 79 57.0
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 7.3e-12 74.3 81 43.2
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.1e-11 72.8 84 40.5
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.1e-10 70.5 90 40.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.0e-09 66.2 81 45.7
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.7e-08 63.2 63 46.0
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.1e-06 56.2 76 38.2


User provided reference genes

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