Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0479751 Helianthus annuus HOM05D002235 ORTHO05D225803 3.2e-53 211.5 104 100.0
HanXRQChr10g0305801 Helianthus annuus HOM05D002235 ORTHO05D006252 4.2e-21 104.8 64 89.1
ECA234G2016 Erigeron canadensis HOM05D002235 ORTHO05D006252 1.8e-19 99.4 64 81.2
Lsat_1_v5_gn_5_125300 Lactuca sativa HOM05D002235 ORTHO05D006252 5.7e-18 94.4 64 79.7
Atru.chr6.3175 Acer truncatum HOM05D002235 ORTHO05D006252 1.5e-15 86.3 62 71.0
GSVIVG01030599001 Vitis vinifera HOM05D002235 ORTHO05D006252 7.7e-15 84.0 57 75.4
Dinv05442 Davidia involucrata HOM05D002235 ORTHO05D006252 1.3e-14 83.2 67 68.7
CSS0042137 Camellia sinensis var. sinensis HOM05D002235 ORTHO05D006252 2.2e-14 82.4 62 69.4
CSS0044404 Camellia sinensis var. sinensis HOM05D002235 ORTHO05D006252 2.2e-14 82.4 62 69.4
Potri.014G153000 Populus trichocarpa HOM05D002235 ORTHO05D006252 3.8e-14 81.6 57 70.2
Cfa014413 Carpinus fangiana HOM05D002235 ORTHO05D006252 5.0e-14 81.3 68 66.2
COL.COLO4_27703 Corchorus olitorius HOM05D002235 ORTHO05D006252 8.5e-14 80.5 57 70.2
Eucgr.A01711 Eucalyptus grandis HOM05D002235 ORTHO05D006252 1.4e-13 79.7 57 66.7
Sabra14G0115900 Salix brachista HOM05D002235 ORTHO05D006252 1.4e-13 79.7 54 70.4
Gohir.D13G088300 Gossypium hirsutum HOM05D002235 ORTHO05D006252 1.9e-13 79.3 66 62.1
Gorai.013G101000 Gossypium raimondii HOM05D002235 ORTHO05D006252 1.9e-13 79.3 66 62.1
Thecc.02G313800 Theobroma cacao HOM05D002235 ORTHO05D006252 2.5e-13 79.0 66 63.6
CANSAT64G1242 Cannabis sativa HOM05D002235 ORTHO05D006252 3.2e-13 78.6 67 61.2
CiPaw.03G160500 Carya illinoinensis HOM05D002235 ORTHO05D006252 3.2e-13 78.6 67 65.7
Hma1.2p1_1748F.1_g300670 Hydrangea macrophylla HOM05D002235 ORTHO05D006252 4.2e-13 78.2 66 65.2
Lj8A125T69 Lonicera japonica HOM05D002235 ORTHO05D006252 4.2e-13 78.2 61 62.3
Prupe.1G100300 Prunus persica HOM05D002235 ORTHO05D006252 5.5e-13 77.8 67 62.7
Duzib251G0293 Durio zibethinus HOM05D002235 ORTHO05D006252 7.2e-13 77.4 56 69.6
TWI18G1280 Tripterygium wilfordii HOM05D002235 ORTHO05D006252 7.2e-13 77.4 57 66.7
Haze_12873 Corylus avellana HOM05D002235 ORTHO05D006252 9.4e-13 77.0 68 63.2
QL07p005233 Quercus lobata HOM05D002235 ORTHO05D006252 9.4e-13 77.0 67 61.2
Gohir.A13G094300 Gossypium hirsutum HOM05D002235 ORTHO05D006252 1.6e-12 76.3 66 60.6
Ciclev10016578m.g Citrus clementina HOM05D002235 ORTHO05D006252 2.1e-12 75.9 103 45.6
RcHm_v2.0_Chr2g0159551 Rosa chinensis HOM05D002235 ORTHO05D006252 3.6e-12 75.1 57 64.9
FvH4_6g43280 Fragaria vesca HOM05D002235 ORTHO05D006252 4.6e-12 74.7 57 64.9
TAR626G0760 Trochodendron aralioides HOM05D002235 ORTHO05D006252 6.1e-12 74.3 56 64.3
FAN05G0628 Fragaria x ananassa HOM05D002235 ORTHO05D006252 7.9e-12 73.9 57 63.2
Lsat_1_v5_gn_5_33001 Lactuca sativa HOM05D002235 ORTHO05D006252 1.0e-11 73.6 56 69.6
FAN02G2679 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.4e-11 73.2 57 63.2
MBI02_g28342_MAGBIO Magnolia biondii HOM05D002235 ORTHO05D006252 1.8e-11 72.8 66 59.1
Nitab4.5_0010082g0050 Nicotiana tabacum HOM05D002235 ORTHO05D006252 1.8e-11 72.8 64 62.5
MELO3C018813.2 Cucumis melo HOM05D002235 ORTHO05D006252 2.3e-11 72.4 56 60.7
TPR.G8169 Trifolium pratense HOM05D002235 ORTHO05D006252 2.3e-11 72.4 67 58.2
MD17G1096300 Malus domestica HOM05D002235 ORTHO05D006252 3.0e-11 72.0 68 60.3
MD09G1108400 Malus domestica HOM05D002235 ORTHO05D006252 3.9e-11 71.6 60 61.7
FAN14G5807 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.1e-11 71.2 54 64.8
MBI02_g15249_MAGBIO Magnolia biondii HOM05D002235 ORTHO05D006252 5.1e-11 71.2 66 59.1
PGR042G1696 Punica granatum HOM05D002235 ORTHO05D006252 5.1e-11 71.2 67 56.7
BcaC07g42148 Brassica carinata HOM05D002235 ORTHO05D006252 6.7e-11 70.9 64 57.8
C08p51940 Brassica napus HOM05D002235 ORTHO05D006252 6.7e-11 70.9 64 57.8
Aqoxy1G03636 Aquilegia oxysepala HOM05D002235 ORTHO05D006252 1.1e-10 70.1 54 66.7
PSO210G1973 Papaver somniferum HOM05D002235 ORTHO05D006252 1.1e-10 70.1 67 58.2
Os03g0751400 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D006252 1.5e-10 69.7 56 57.1
Rhsim06G0161200 Rhododendron simsii HOM05D002235 ORTHO05D006252 1.5e-10 69.7 68 54.4
Sp1g04040 Schrenkiella parvula HOM05D002235 ORTHO05D006252 1.5e-10 69.7 64 57.8
SpUn0024_0100 Schrenkiella parvula HOM05D002235 ORTHO05D006252 1.5e-10 69.7 64 57.8
TAR624G1336 Trochodendron aralioides HOM05D002235 ORTHO05D006252 1.5e-10 69.7 54 68.5
Ca_27441_v3 Cicer arietinum L. HOM05D002235 ORTHO05D006252 2.0e-10 69.3 67 55.2
CsaV3_7G003660 Cucumis sativus L. HOM05D002235 ORTHO05D006252 2.0e-10 69.3 61 52.5
PSO832G4463 Papaver somniferum HOM05D002235 ORTHO05D006252 2.0e-10 69.3 67 56.7
Potri.002G229325 Populus trichocarpa HOM05D002235 ORTHO05D006252 2.0e-10 69.3 54 61.1
Sed0014516 Sechium edule HOM05D002235 ORTHO05D006252 2.0e-10 69.3 57 59.6
vmacro12207 Vaccinium macrocarpon HOM05D002235 ORTHO05D006252 2.0e-10 69.3 68 55.9
Actinidia09712 Actinidia chinensis HOM05D002235 ORTHO05D006252 2.5e-10 68.9 65 61.5
Aa31LG1G19560 Aethionema arabicum HOM05D002235 ORTHO05D006252 2.5e-10 68.9 66 57.6
A10p03720 Brassica napus HOM05D002235 ORTHO05D006252 2.5e-10 68.9 64 56.2
BraA10t42645Z Brassica rapa HOM05D002235 ORTHO05D006252 2.5e-10 68.9 64 56.2
Carub.0001s0446 Capsella rubella HOM05D002235 ORTHO05D006252 2.5e-10 68.9 64 57.8
Glyma.09G138400 Glycine max HOM05D002235 ORTHO05D006252 2.5e-10 68.9 56 64.3
Lalb_Chr01g0009331 Lupinus albus HOM05D002235 ORTHO05D006252 2.5e-10 68.9 67 56.7
Peaxi162Scf00062g01418 Petunia axillaris HOM05D002235 ORTHO05D006252 2.5e-10 68.9 57 64.9
ClCG02G001880 Citrullus lanatus HOM05D002235 ORTHO05D006252 3.3e-10 68.6 60 55.0
Glyma.16G189100 Glycine max HOM05D002235 ORTHO05D006252 3.3e-10 68.6 67 56.7
AL1G14950 Arabidopsis lyrata HOM05D002235 ORTHO05D006252 5.7e-10 67.8 64 56.2
AT1G05190 Arabidopsis thaliana HOM05D002235 ORTHO05D006252 5.7e-10 67.8 64 56.2
Psat1g066560 Pisum sativum HOM05D002235 ORTHO05D006252 5.7e-10 67.8 67 52.2
C05p03420 Brassica napus HOM05D002235 ORTHO05D006252 7.4e-10 67.4 64 54.7
BolC5t29121H Brassica oleracea HOM05D002235 ORTHO05D006252 7.4e-10 67.4 64 54.7
BraA09t42090Z Brassica rapa HOM05D002235 ORTHO05D006252 9.7e-10 67.0 65 56.9
DCAR_019767 Daucus carota HOM05D002235 ORTHO05D006252 9.7e-10 67.0 54 64.8
Thhalv10008693m.g Eutrema salsugineum HOM05D002235 ORTHO05D006252 9.7e-10 67.0 67 56.7
Lalb_Chr03g0034571 Lupinus albus HOM05D002235 ORTHO05D006252 9.7e-10 67.0 67 53.7
TWI36G0046 Tripterygium wilfordii HOM05D002235 ORTHO05D006252 9.7e-10 67.0 57 59.6
Nn3g19321 Nelumbo nucifera HOM05D002235 ORTHO05D006252 1.7e-09 66.2 54 64.8
PGSC0003DMG401023851 Solanum tuberosum HOM05D002235 ORTHO05D006252 2.8e-09 65.5 64 59.4
BolC8t52725H Brassica oleracea HOM05D002235 ORTHO05D006252 3.7e-09 65.1 65 56.9
A09p67570 Brassica napus HOM05D002235 ORTHO05D006252 4.8e-09 64.7 65 55.4
Migut.H00629 Erythranthe guttata HOM05D002235 ORTHO05D006252 6.3e-09 64.3 57 63.2
Nitab4.5_0001925g0020 Nicotiana tabacum HOM05D002235 ORTHO05D006252 8.2e-09 63.9 64 59.4
Solyc12g100160.3 Solanum lycopersicum HOM05D002235 ORTHO05D006252 8.2e-09 63.9 64 59.4
Sopen12g034790 Solanum pennellii HOM05D002235 ORTHO05D006252 8.2e-09 63.9 64 59.4
Cpa.g.sc8.216 Carica papaya HOM05D002235 ORTHO05D006252 1.1e-08 63.5 50 66.0
Lj2g0022309 Lotus japonicus HOM05D002235 ORTHO05D006252 1.1e-08 63.5 57 59.6
Phvul.004G116200 Phaseolus vulgaris HOM05D002235 ORTHO05D006252 1.1e-08 63.5 68 52.9
CARHR004660 Cardamine hirsuta HOM05D002235 ORTHO05D006252 1.4e-08 63.2 65 55.4
CDE05G1755 Ceratophyllum demersum HOM05D002235 ORTHO05D006252 1.4e-08 63.2 54 53.7
EL10Ac9g20979 Beta vulgaris HOM05D002235 ORTHO05D006252 1.8e-08 62.8 64 57.8
Sed0015264 Sechium edule HOM05D002235 ORTHO05D006252 1.8e-08 62.8 67 49.3
Hund22246 Selenicereus undatus HOM05D002235 ORTHO05D006252 1.8e-08 62.8 67 55.2
Sc06g0009540 Simmondsia chinensis HOM05D002235 ORTHO05D006252 1.8e-08 62.8 49 65.3
VMungo0464G0253 Vigna mungo HOM05D002235 ORTHO05D006252 2.4e-08 62.4 67 53.7
arahy.Tifrunner.gnm1.ann1.9LRG3U Arachis hypogaea HOM05D002235 ORTHO05D006252 3.1e-08 62.0 67 50.7
arahy.Tifrunner.gnm1.ann1.BMD0WJ Arachis hypogaea HOM05D002235 ORTHO05D006252 3.1e-08 62.0 56 55.4
Nn1g01949 Nelumbo nucifera HOM05D002235 ORTHO05D006252 3.1e-08 62.0 54 61.1
CDE05G1249 Ceratophyllum demersum HOM05D002235 ORTHO05D006252 4.1e-08 61.6 54 51.9
Ah.01g005000 Amaranthus hybridus HOM05D002235 ORTHO05D006252 5.3e-08 61.2 61 55.7
THA.LOC104800989 Tarenaya hassleriana HOM05D002235 ORTHO05D006252 9.1e-08 60.5 67 53.7
CAN.G575.51 Capsicum annuum HOM05D002235 ORTHO05D006252 1.2e-07 60.1 48 64.6
THA.LOC104826153 Tarenaya hassleriana HOM05D002235 ORTHO05D006252 1.2e-07 60.1 57 59.6
Os03g0356300 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D006252 2.0e-07 59.3 56 51.8
AUR62037131 Chenopodium quinoa HOM05D002235 ORTHO05D006252 4.5e-07 58.2 52 59.6
Zm00001eb394520 Zea mays HOM05D002235 ORTHO05D006252 4.5e-07 58.2 56 53.6
HPP92_004133 Vanilla planifolia HOM05D002235 ORTHO05D006252 1.0e-06 57.0 55 54.5
ATR0752G019 Amborella trichopoda HOM05D002235 ORTHO05D006252 1.7e-06 56.2 54 53.7
AUR62025126 Chenopodium quinoa HOM05D002235 ORTHO05D006252 2.2e-06 55.8 40 67.5
MSTRG.23886 Avicennia marina HOM05D002235 ORTHO05D006252 8.5e-06 53.9 50 58.0


User provided reference genes

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