Gene: AT1G05190

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G05190
  • Transcript Identifier AT1G05190.1
  • Gene Type Coding gene
  • Location Chr1 : 1502515-1503738 : negative

Gene Family Information

  • ID HOM05D002235
  • #Genes/#Species 301/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G05190.1
  • symbol emb2394
  • full_name embryo defective 2394
  • uniprot O23049

Descriptions

  • Description Ribosomal protein L6 family
  • Computational description embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0019843
IEA
InterProrRNA binding
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IMP
IBA
Gene Ontologystructural constituent of ribosome1 2
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma4
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast5
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0005576
HDA
Gene Ontologyextracellular region7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000702 Ribosomal protein L6
IPR036789 Ribosomal protein L6, alpha-beta domain superfamily
IPR020040 Ribosomal protein L6, alpha-beta domain
IPR019906 Ribosomal protein L6, bacterial-type
Mapman id Description
17.7.2.1.6 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL6