Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0470541 Helianthus annuus HOM05D003128 ORTHO05D028355 3.7e-51 204.5 100 100.0
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 6.9e-21 104.0 74 71.6
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 1.3e-19 99.8 74 67.6
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.7e-19 99.4 74 67.6
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 1.6e-17 92.8 74 64.9
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 2.1e-17 92.4 74 64.9
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 2.3e-16 89.0 74 60.8
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 3.0e-16 88.6 74 62.2
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 5.1e-16 87.8 74 59.5
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.1e-15 86.7 74 60.8
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 1.1e-15 86.7 74 58.1
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 1.1e-15 86.7 74 60.8
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 1.1e-15 86.7 74 59.5
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 1.5e-15 86.3 74 58.1
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.5e-15 86.3 93 49.5
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.9e-15 85.9 73 58.9
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.9e-15 85.9 73 58.9
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.9e-15 85.9 68 64.7
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.5e-15 85.5 73 57.5
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 2.5e-15 85.5 74 59.5
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 3.3e-15 85.1 74 59.5
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 4.3e-15 84.7 87 51.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 4.3e-15 84.7 74 58.1
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 4.3e-15 84.7 74 58.1
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 4.3e-15 84.7 74 58.1
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 4.3e-15 84.7 74 59.5
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 4.3e-15 84.7 82 53.7
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 7.4e-15 84.0 74 58.1
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 7.4e-15 84.0 74 58.1
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 7.4e-15 84.0 74 58.1
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 7.4e-15 84.0 74 59.5
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 7.4e-15 84.0 68 63.2
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 7.4e-15 84.0 87 55.2
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 7.4e-15 84.0 73 56.2
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 9.6e-15 83.6 74 56.8
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 9.6e-15 83.6 74 58.1
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.3e-14 83.2 74 56.8
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 1.3e-14 83.2 74 58.1
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.3e-14 83.2 74 58.1
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 1.3e-14 83.2 74 59.5
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.3e-14 83.2 74 56.8
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.6e-14 82.8 74 56.8
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.6e-14 82.8 74 56.8
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 2.1e-14 82.4 74 56.8
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 2.1e-14 82.4 74 58.1
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 2.1e-14 82.4 74 56.8
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 2.1e-14 82.4 74 56.8
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 56.8
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 56.8
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.8e-14 82.0 73 54.8
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 58.1
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 58.1
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 56.8
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 56.8
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 2.8e-14 82.0 73 54.8
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 2.8e-14 82.0 74 56.8
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 3.7e-14 81.6 87 52.9
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 3.7e-14 81.6 74 56.8
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 3.7e-14 81.6 87 52.9
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 3.7e-14 81.6 74 58.1
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 4.8e-14 81.3 74 58.1
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 4.8e-14 81.3 87 54.0
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 4.8e-14 81.3 74 56.8
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 4.8e-14 81.3 74 55.4
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 55.4
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 58.1
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 6.2e-14 80.9 73 53.4
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 6.2e-14 80.9 74 54.1
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 1.1e-13 80.1 74 55.4
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 1.1e-13 80.1 74 55.4
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 1.1e-13 80.1 73 54.8
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.1e-13 80.1 73 53.4
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.4e-13 79.7 74 54.1
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.4e-13 79.7 74 54.1
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.4e-13 79.7 87 51.7
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.4e-13 79.7 87 50.6
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.4e-13 79.7 74 55.4
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.8e-13 79.3 74 54.1
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 1.8e-13 79.3 74 56.8
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 1.8e-13 79.3 74 56.8
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 1.8e-13 79.3 87 49.4
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.8e-13 79.3 74 56.8
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.8e-13 79.3 74 56.8
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 2.4e-13 79.0 74 55.4
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.4e-13 79.0 74 55.4
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 2.4e-13 79.0 74 55.4
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 2.4e-13 79.0 74 56.8
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 3.1e-13 78.6 74 56.8
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 3.1e-13 78.6 75 54.7
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.0e-13 78.2 69 60.9
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 4.0e-13 78.2 74 54.1
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.0e-13 78.2 106 42.5
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 5.3e-13 77.8 74 54.1
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 5.3e-13 77.8 74 55.4
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 5.3e-13 77.8 87 50.6
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 5.3e-13 77.8 74 54.1
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 6.9e-13 77.4 80 52.5
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 6.9e-13 77.4 81 48.1
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 6.9e-13 77.4 74 55.4
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 6.9e-13 77.4 74 52.7
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 9.0e-13 77.0 74 55.4
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 9.0e-13 77.0 74 55.4
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 9.0e-13 77.0 74 55.4
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.2e-12 76.6 74 54.1
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 1.2e-12 76.6 74 52.7
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 1.2e-12 76.6 72 56.9
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 1.5e-12 76.3 74 51.4
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 1.5e-12 76.3 74 54.1
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 1.5e-12 76.3 74 54.1
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 2.0e-12 75.9 74 54.1
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.0e-12 75.9 75 50.7
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.0e-12 75.9 75 50.7
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.0e-12 75.9 75 50.7
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.0e-12 75.9 74 52.7
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 2.6e-12 75.5 64 57.8
CSS0048862 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D028355 2.6e-12 75.5 65 55.4
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 2.6e-12 75.5 74 48.6
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 2.6e-12 75.5 74 52.7
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.4e-12 75.1 90 46.7
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 4.5e-12 74.7 74 52.7
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 4.5e-12 74.7 74 54.1
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 5.8e-12 74.3 74 52.7
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.0e-11 73.6 80 50.0
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 1.7e-11 72.8 73 52.1
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.7e-11 72.8 64 54.7
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 1.7e-11 72.8 71 53.5
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.7e-11 72.8 63 55.6
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 4.9e-11 71.2 74 45.9
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 6.5e-11 70.9 80 47.5
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 1.4e-10 69.7 62 56.5
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.4e-10 69.7 80 46.2
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 2.5e-10 68.9 80 45.0
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 2.5e-10 68.9 80 45.0
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 2.5e-10 68.9 90 45.6
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 4.2e-10 68.2 80 45.0
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 4.2e-10 68.2 76 51.3
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 2.1e-09 65.9 86 43.0
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 1.3e-08 63.2 73 46.6
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 1.5e-07 59.7 73 42.5
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 1.9e-07 59.3 63 44.4
Haze_27303 Corylus avellana HOM05D003128 ORTHO05D004333 1.3e-06 56.6 73 39.7


User provided reference genes

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