Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 8.0e-169 597.0 308 100.0
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 4.5e-148 528.1 308 88.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.1e-128 463.8 283 86.9
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.3e-123 446.8 310 76.8
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 2.4e-120 436.0 306 76.1
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 8.9e-120 434.1 306 75.8
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 7.6e-119 431.0 308 74.0
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.9e-115 418.7 304 75.0
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.6e-115 417.9 306 74.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 3.3e-114 415.6 310 73.5
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.6e-113 413.3 309 72.5
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 2.8e-113 412.5 310 71.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 2.8e-113 412.5 314 70.7
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 3.6e-113 412.1 284 77.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.1e-112 410.6 306 72.5
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.4e-112 410.2 309 70.6
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.8e-112 409.8 355 65.6
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 3.1e-112 409.1 306 72.5
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 4.0e-112 408.7 309 71.5
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 6.9e-112 407.9 308 71.8
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.2e-111 407.1 310 70.6
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 5.8e-111 404.8 308 71.4
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 7.6e-111 404.4 304 71.7
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 7.6e-111 404.4 304 72.0
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.7e-110 403.3 308 71.4
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.7e-110 403.3 304 74.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.2e-110 402.9 304 71.4
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.9e-110 402.5 307 70.4
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 2.9e-110 402.5 303 71.3
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 4.9e-110 401.7 305 72.5
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.4e-110 401.4 305 72.1
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.9e-109 399.8 306 71.6
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.9e-109 399.8 306 71.6
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 2.4e-109 399.4 307 72.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 2.4e-109 399.4 306 72.5
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 7.1e-109 397.9 304 72.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 7.1e-109 397.9 303 70.6
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 9.3e-109 397.5 305 71.5
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.6e-108 396.7 307 69.4
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.7e-108 396.0 307 69.4
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 2.7e-108 396.0 305 71.1
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 2.7e-108 396.0 312 68.6
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 3.5e-108 395.6 307 72.3
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 6.0e-108 394.8 308 68.8
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.0e-107 394.0 309 69.6
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.0e-107 392.5 303 69.3
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 3.0e-107 392.5 303 68.6
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 3.0e-107 392.5 286 73.1
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 3.9e-107 392.1 308 70.1
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.9e-106 389.8 311 68.8
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.3e-106 389.0 303 67.7
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 5.6e-106 388.3 307 68.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 5.6e-106 388.3 304 68.1
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 5.6e-106 388.3 309 68.0
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 7.3e-106 387.9 340 65.9
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.3e-105 387.1 326 65.6
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.3e-105 387.1 305 69.5
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.3e-105 387.1 309 69.6
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.8e-105 386.0 324 66.0
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.8e-105 386.0 309 67.6
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.2e-105 384.8 300 71.0
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 8.1e-105 384.4 312 66.7
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.1e-104 384.0 324 65.7
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.5e-103 380.2 306 69.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 9.9e-103 377.5 314 67.5
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.9e-102 375.9 311 65.3
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 3.8e-102 375.6 322 65.5
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.9e-101 373.2 312 66.7
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.9e-101 373.2 312 66.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 4.6e-100 368.6 309 67.0
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 6.0e-100 368.2 313 64.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.0e-99 365.9 375 56.8
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 3.3e-98 362.5 345 60.9
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.6e-97 360.1 366 57.1
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 4.8e-97 358.6 335 62.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.3e-96 355.1 299 65.6
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 3.4e-95 352.4 278 70.5
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 4.5e-95 352.1 306 65.0
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 5.8e-95 351.7 282 69.5
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 7.6e-95 351.3 262 74.8
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 8.4e-94 347.8 340 60.0
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 2.4e-93 346.3 262 73.7
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 7.1e-93 344.7 309 63.4
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 4.6e-92 342.0 334 58.1
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.8e-91 340.1 316 62.0
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 5.6e-90 335.1 265 69.4
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 7.4e-90 334.7 260 69.2
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 7.4e-90 334.7 270 70.0
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.6e-89 333.6 203 82.8
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.2e-89 331.6 314 63.1
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 6.2e-89 331.6 239 73.6
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 8.2e-89 331.3 261 70.5
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.4e-88 330.5 260 69.6
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.0e-87 326.6 307 60.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.4e-87 325.9 374 54.0
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.0e-86 324.3 203 79.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 1.4e-85 320.5 267 65.2
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.2e-85 319.3 288 63.5
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 4.2e-85 318.9 203 78.3
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 7.1e-85 318.2 260 66.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.7e-83 311.6 255 70.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 6.7e-83 311.6 322 56.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.8e-80 303.5 187 83.4
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 5.3e-80 302.0 272 62.9
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.6e-79 299.7 333 52.6
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 2.9e-78 296.2 304 54.3
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.1e-77 294.3 304 59.9
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 5.5e-77 292.0 251 67.3
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.0e-75 287.7 255 63.5
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 2.5e-74 283.1 263 61.2
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 4.3e-74 282.3 231 68.0
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.1e-72 275.8 274 58.8
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 7.7e-71 271.6 249 62.7
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 3.8e-70 269.2 192 68.8
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.5e-69 266.5 293 53.2
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.5e-69 265.4 297 53.2
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 7.2e-69 265.0 167 81.4
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.2e-69 265.0 228 61.8
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.1e-66 257.7 345 47.0
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.4e-64 250.0 291 50.5
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 5.0e-62 242.3 157 80.3
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.1e-60 236.9 208 62.5
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 8.0e-52 208.4 158 69.6
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.3e-49 201.1 132 80.3
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.3e-30 137.9 304 32.9
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 8.3e-25 118.6 334 31.1
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.2e-24 116.7 145 47.6
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 2.2e-17 94.0 334 29.0
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 3.0e-14 83.6 116 47.4
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.5e-13 80.5 67 65.7
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.6e-13 79.3 57 66.7
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.5e-10 71.2 69 60.9
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 1.6e-07 61.2 57 56.1
Lsat_1_v5_gn_3_62520 Lactuca sativa HOM05D004625 ORTHO05D229103 6.0e-07 59.3 38 81.6
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 7.8e-07 58.9 75 50.7
Lsat_1_v5_gn_4_27681 Lactuca sativa HOM05D000106 ORTHO05D231985 1.3e-06 58.2 45 68.9


User provided reference genes

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