Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 2947.5 1476 100.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 2204.9 1490 74.8
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 2097.8 1501 72.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1859.0 1523 64.3
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1844.3 1514 61.8
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1838.5 1540 63.6
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1775.4 1506 60.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1751.9 1536 59.4
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1743.4 1531 58.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1712.6 1461 59.8
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1682.2 1506 57.6
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1678.3 1515 57.6
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1656.7 1511 57.4
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1647.5 1507 57.1
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1631.7 1514 56.3
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1619.8 1496 56.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1619.4 1524 56.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1616.7 1514 55.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1608.6 1509 55.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1604.7 1506 55.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1586.2 1545 55.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1583.5 1499 55.0
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1578.9 1505 55.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1577.0 1505 55.3
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1574.3 1521 55.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1570.8 1516 55.4
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1568.1 1494 55.6
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1560.4 1517 54.2
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1554.7 1512 54.4
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1551.2 1498 53.9
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1547.3 1526 54.9
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1546.9 1510 53.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1542.3 1498 53.4
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1498 54.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1536.9 1521 54.5
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1531.5 1503 54.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1530.8 1517 54.2
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1530.0 1515 54.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1524.2 1510 52.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1512.7 1616 51.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1503.4 1500 53.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1491.1 1439 55.1
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1487.6 1497 53.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1481.5 1500 53.1
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1479.9 1505 52.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1478.0 1499 52.7
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1476.5 1504 52.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1472.6 1507 52.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1472.2 1506 52.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1470.3 1520 51.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1463.0 1501 51.5
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1461.0 1519 51.0
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1461.0 1519 51.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1460.3 1513 51.9
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1449.9 1510 49.5
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1446.8 1486 52.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1441.0 1509 49.8
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1438.3 1505 51.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1434.9 1488 51.1
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1432.5 1509 49.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1418.3 1493 51.0
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1417.5 1300 56.4
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1409.4 1529 49.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1204 59.3
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1342.4 1445 50.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1341.6 1380 53.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1339.3 1507 48.0
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1338.2 1516 48.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1334.3 1506 47.9
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1332.8 1497 47.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1332.0 1244 55.9
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1331.6 1508 48.3
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1506 47.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1322.8 1503 47.4
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1320.4 1505 48.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1316.6 1533 46.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1315.1 1504 47.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1302.3 1536 46.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1302.3 1513 46.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1297.7 1505 47.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1296.6 1749 42.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1279.2 1507 46.8
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1260.0 1487 48.4
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1251.1 1093 59.8
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1231.9 1534 45.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1231.1 1054 60.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1214.9 1134 57.1
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1194.9 1507 44.2
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1190.3 1161 54.2
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1169.8 967 62.6
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1166.4 1289 49.3
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1112.1 972 60.1
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1078.9 1124 52.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 9.1e-263 911.4 1113 45.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.9e-248 862.4 1143 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.4e-242 844.3 1521 35.4
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 5.4e-231 805.8 1534 35.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 3.8e-224 783.1 1543 34.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 8.1e-203 712.2 1001 41.8
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-202 711.4 599 58.9
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-199 701.8 565 66.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 9.3e-191 672.2 1380 33.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.1e-190 671.0 580 60.9
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-189 668.3 576 61.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 9.4e-183 645.6 1023 39.3
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 5.7e-180 636.3 1020 38.6
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.4e-178 631.7 1020 38.7
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-176 625.2 642 51.7
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.4e-175 621.7 557 59.6
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.2e-171 605.9 620 54.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 9.2e-138 496.1 481 56.5
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 3.6e-126 457.6 558 46.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 8.1e-126 456.4 1042 33.6
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.3e-123 446.4 571 44.5
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 8.9e-109 399.8 525 45.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-100 370.5 1038 27.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.1e-96 357.5 510 40.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.7e-83 315.8 450 41.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-81 309.7 302 52.6
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 7.9e-81 307.0 803 29.5
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.0e-80 306.6 359 43.5
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.9e-80 304.7 537 34.1
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-76 292.7 435 42.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.5e-75 287.3 319 43.9
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 3.0e-72 278.5 306 48.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-68 266.5 278 47.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-68 266.5 409 41.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.9e-67 261.9 209 59.8
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 6.5e-67 260.8 466 34.5
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 5.5e-66 257.7 325 44.0
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 9.4e-66 256.9 389 39.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.8e-62 244.6 357 38.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.8e-59 235.0 243 51.0
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.6e-57 229.6 212 55.2
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.6e-57 228.4 192 57.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-51 209.5 270 47.0
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.7e-49 202.2 282 43.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.2e-48 198.0 310 37.7
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.8e-46 192.2 280 40.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 3.1e-37 162.2 378 32.5
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.1e-37 161.8 197 47.2
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 9.1e-37 160.6 195 42.1
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-36 159.8 131 58.0
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 8.6e-35 154.1 110 65.5
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 7.2e-34 151.0 181 50.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 9.5e-34 150.6 186 47.8
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.6e-33 148.7 109 56.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 4.4e-31 141.7 185 43.2
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.3e-30 140.2 192 39.6
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.8e-30 139.0 112 59.8
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.8e-29 136.3 122 54.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.7e-25 121.7 147 46.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 5.8e-15 88.2 110 46.4
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 8.3e-14 84.3 100 50.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-13 82.4 295 24.7
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 4.1e-13 82.0 100 49.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 4.6e-12 78.6 269 23.4
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 5.6e-10 71.6 201 27.9
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 9.5e-10 70.9 99 40.4
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 4.7e-09 68.6 55 56.4
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.4e-08 67.0 99 39.4
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 6.8e-08 64.7 142 31.0
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.5e-07 63.5 42 71.4
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.6e-07 62.8 54 57.4
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 6.4e-06 58.2 91 39.6
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.3e-06 57.8 65 46.2


User provided reference genes

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