Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1500.3 809 100.0
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1500.3 809 100.0
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 0.0e+00 1190.3 843 72.8
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1188.3 843 73.4
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 0.0e+00 1173.3 879 70.2
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 0.0e+00 1147.5 844 69.9
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1147.1 844 70.6
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 0.0e+00 1145.2 844 69.8
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 0.0e+00 1134.8 844 69.7
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1133.2 844 69.5
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 0.0e+00 1131.7 844 69.3
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 0.0e+00 1131.7 845 69.6
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 0.0e+00 1128.2 845 68.6
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 0.0e+00 1127.1 844 69.0
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1125.9 844 69.1
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 0.0e+00 1125.9 846 68.9
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1125.5 844 68.8
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 0.0e+00 1125.2 844 69.3
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 0.0e+00 1124.8 846 69.5
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1124.8 846 69.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 0.0e+00 1123.2 844 68.7
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 0.0e+00 1123.2 844 68.8
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 0.0e+00 1121.3 844 68.1
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 0.0e+00 1120.5 845 69.0
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1120.1 846 68.8
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 0.0e+00 1119.8 843 68.2
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1118.6 844 68.1
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 0.0e+00 1117.8 844 67.8
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 0.0e+00 1117.4 844 68.0
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 0.0e+00 1117.1 844 67.8
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 0.0e+00 1116.3 844 69.0
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 0.0e+00 1115.5 844 68.8
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 0.0e+00 1114.0 843 68.1
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1114.0 842 68.6
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 0.0e+00 1112.8 845 68.0
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 0.0e+00 1110.9 844 68.2
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1110.5 844 68.1
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 0.0e+00 1110.5 851 68.4
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1109.7 844 66.7
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 0.0e+00 1108.2 843 68.0
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1107.8 841 67.9
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1106.7 844 68.2
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 0.0e+00 1106.7 843 67.3
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1106.3 843 67.5
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1105.5 850 67.3
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 0.0e+00 1104.7 848 67.6
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1104.4 845 67.7
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 0.0e+00 1103.6 864 66.1
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1102.8 839 67.5
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1101.7 850 67.2
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1100.5 843 67.5
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1099.7 844 68.0
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1099.3 844 67.5
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1098.6 845 67.5
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 0.0e+00 1098.6 843 67.3
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 0.0e+00 1098.6 844 67.5
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 0.0e+00 1097.8 844 67.2
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 0.0e+00 1093.2 965 61.0
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1092.4 846 66.8
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 0.0e+00 1088.9 851 67.6
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 0.0e+00 1088.9 844 66.1
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 0.0e+00 1088.9 847 66.7
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1087.8 891 64.3
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 0.0e+00 1086.6 834 67.9
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 0.0e+00 1084.3 844 66.0
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1083.2 852 64.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 0.0e+00 1081.2 857 64.5
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 0.0e+00 1081.2 847 65.4
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1080.5 857 64.5
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 0.0e+00 1080.1 847 65.1
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 0.0e+00 1080.1 830 67.1
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1077.8 857 64.3
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 0.0e+00 1077.0 844 65.5
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 0.0e+00 1076.6 861 64.3
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 5.5e-312 1074.3 882 63.0
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 2.2e-311 1072.0 843 66.1
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 3.2e-310 1068.1 884 62.8
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 5.5e-310 1067.4 881 62.9
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 2.1e-306 1055.4 846 64.9
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.4e-305 1052.7 851 65.1
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 1.0e-303 1046.6 868 62.9
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.5e-302 1042.0 839 65.2
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 3.1e-297 1025.0 863 62.0
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 6.9e-297 1023.8 862 62.3
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.2e-296 1023.1 819 64.7
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.1e-294 1016.5 930 59.5
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 2.5e-294 1015.4 844 63.0
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 4.2e-294 1014.6 847 64.2
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 6.1e-293 1010.7 845 61.8
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 2.6e-291 1005.4 828 64.6
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 4.4e-291 1004.6 843 61.4
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 1.7e-290 1002.7 837 64.0
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 9.1e-289 996.9 860 60.8
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.5e-288 996.1 843 61.9
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 8.5e-287 990.3 807 64.6
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.1e-283 979.9 762 67.7
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 9.7e-283 976.9 770 67.7
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 1.6e-280 969.5 849 60.4
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 5.2e-276 954.5 896 57.5
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 4.8e-274 948.0 843 60.0
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 5.5e-270 934.5 898 56.8
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 3.1e-265 918.7 822 58.6
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 5.9e-264 914.4 1060 50.3
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.9e-262 909.4 841 58.5
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 1.0e-255 887.1 866 56.1
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 2.1e-253 879.4 685 67.3
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 2.1e-253 879.4 852 55.9
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.2e-250 869.4 878 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 5.9e-248 861.3 850 53.9
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 4.6e-240 835.1 845 52.8
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 3.0e-239 832.4 710 62.5
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 4.3e-230 802.0 526 75.1
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 1.1e-220 770.8 497 77.3
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 3.0e-199 699.5 352 98.9
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 6.7e-199 698.4 842 48.3
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 4.5e-195 685.6 840 47.4
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 2.4e-188 663.3 482 68.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 2.0e-187 660.2 881 44.3
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 8.5e-178 628.2 657 51.6
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 5.7e-174 615.5 497 65.4
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 9.4e-169 598.2 415 73.7
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.2e-163 581.3 463 66.5
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.2e-161 573.2 526 58.2
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 3.7e-157 559.7 386 70.7
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 6.3e-157 558.9 463 64.4
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 1.8e-151 540.8 464 63.8
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 1.7e-141 507.7 380 67.4
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.2e-141 507.3 523 55.4
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.8e-140 504.2 520 55.4
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 5.4e-140 502.7 562 53.4
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.7e-139 500.4 379 64.4
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 8.3e-133 478.8 459 58.8
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 3.9e-130 469.9 670 43.9
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 9.8e-126 455.3 822 36.7
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 7.5e-118 429.1 324 65.7
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.3e-105 386.7 896 36.6
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.6e-104 384.8 839 33.4
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 1.5e-102 378.3 952 29.9
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.1e-96 357.8 261 68.2
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 4.8e-96 356.7 351 55.6
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 1.1e-95 355.5 236 75.4
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 4.5e-94 350.1 236 74.6
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.5e-89 335.1 294 62.2
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 1.9e-84 318.2 506 41.3
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.1e-79 300.8 874 28.7
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 4.9e-77 293.5 194 71.6
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 4.9e-77 293.5 237 65.0
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 8.7e-74 282.7 1039 27.0
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.2e-72 278.1 508 38.2
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.7e-72 277.3 512 38.3
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 7.7e-70 269.6 229 64.2
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 5.0e-69 266.9 236 60.2
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 4.5e-62 243.8 168 73.2
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 4.4e-57 227.3 148 77.7
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 2.1e-51 208.4 134 71.6
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 5.7e-49 200.3 219 54.8
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 1.3e-48 199.1 132 70.5
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 1.6e-46 192.2 126 70.6
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 2.2e-45 188.3 282 40.4
SEGI_10615 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 8.5e-45 186.4 115 81.7
Aqoxy1G03228 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.3e-40 172.6 203 51.2
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.3e-37 162.5 107 68.2
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.7e-37 162.2 126 60.3
SEGI_14617 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.8e-31 142.1 105 66.7
SGA_v2.0_scaffold26G11263 Striga asiatica HOM05D003169 ORTHO05D003700 2.0e-30 138.7 85 71.8
TPR.G40025 Trifolium pratense HOM05D003169 ORTHO05D003700 3.8e-29 134.4 98 62.2
Actinidia33340 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.2e-25 122.9 77 83.1
Actinidia33339 Actinidia chinensis HOM05D003169 ORTHO05D003700 2.0e-22 112.1 72 70.8
RhsimUnG0048600 Rhododendron simsii HOM05D003169 ORTHO05D003700 4.6e-22 110.9 194 39.7
SEGI_39235 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.9e-21 107.8 72 72.2
TPR.G20402 Trifolium pratense HOM05D003169 ORTHO05D003700 1.6e-19 102.4 60 85.0
BcaC03g15885 Brassica carinata HOM05D014255 ORTHO05D015450 3.6e-19 101.3 78 60.3
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 3.4e-17 94.7 62 72.6
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 5.8e-17 94.0 70 64.3
BolC2t09653H Brassica oleracea HOM05D003169 ORTHO05D015450 6.4e-16 90.5 83 56.6
MELO3C035414.2 Cucumis melo HOM05D003169 ORTHO05D003700 1.9e-15 89.0 76 51.3
C02p36530 Brassica napus HOM05D003169 ORTHO05D015450 4.1e-15 87.8 82 56.1
Dinv19571 Davidia involucrata HOM05D003169 ORTHO05D003700 1.2e-14 86.3 92 50.0
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 3.9e-13 81.3 55 67.3
TPR.G36388 Trifolium pratense HOM05D003169 ORTHO05D036887 2.8e-11 75.1 47 70.2
TPR.G40298 Trifolium pratense HOM05D003169 ORTHO05D003700 2.8e-11 75.1 71 54.9
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 6.2e-11 73.9 74 48.6
SEGI_01096 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.4e-07 62.8 52 53.8
BcaB02g10945 Brassica carinata HOM05D000798 ORTHO05D003700 6.0e-06 57.4 77 40.3


User provided reference genes

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