Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 0.0e+00 1437.2 709 100.0
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 0.0e+00 1366.3 710 95.5
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1158.3 711 81.3
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1124.8 717 78.2
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 712 75.3
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 1.9e-306 1055.4 706 73.2
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 1.7e-302 1042.3 710 72.3
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 8.2e-302 1040.0 711 71.9
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 2.9e-299 1031.6 712 71.8
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 703 72.3
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 3.6e-297 1024.6 712 70.4
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 4.7e-297 1024.2 707 71.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 6.1e-297 1023.8 715 70.6
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.9e-297 1023.5 711 71.4
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 1.4e-296 1022.7 714 71.1
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 706 72.0
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 6.7e-296 1020.4 712 70.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 8.8e-296 1020.0 711 70.7
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 2.6e-295 1018.5 706 70.5
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 4.4e-295 1017.7 703 70.7
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 7.4e-295 1016.9 714 70.2
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 7.4e-295 1016.9 712 70.6
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.3e-294 1016.1 703 70.7
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 1.3e-294 1016.1 704 70.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 4.8e-294 1014.2 702 70.5
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 6.3e-294 1013.8 699 71.4
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.1e-293 1013.1 711 70.0
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 1.4e-293 1012.7 712 70.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.5e-292 1009.2 712 70.1
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.5e-292 1009.2 712 69.9
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 5.9e-292 1007.3 714 70.0
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 5.9e-292 1007.3 703 70.6
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.7e-291 1005.7 705 70.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 712 69.4
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 2.1e-289 998.8 714 69.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 2.7e-289 998.4 701 69.5
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.4e-288 996.1 703 69.7
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.3e-288 995.3 709 70.4
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.3e-288 995.3 700 70.6
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 3.0e-288 995.0 709 70.2
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.3e-286 989.6 698 70.1
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.2e-286 988.8 728 67.4
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.7e-286 988.0 700 69.9
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.7e-286 988.0 717 69.6
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 4.1e-285 984.6 699 70.1
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.6e-284 982.6 711 69.3
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.6e-284 981.9 711 68.9
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 7.7e-284 980.3 706 69.3
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 6.5e-283 977.2 706 68.6
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 3.2e-282 974.9 702 69.4
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 9.4e-282 973.4 713 68.6
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 9.4e-282 973.4 706 67.7
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.2e-281 973.0 707 68.5
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.6e-281 972.6 736 66.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.6e-281 972.6 706 68.4
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 6.1e-281 970.7 710 68.7
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.4e-280 969.5 702 68.5
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 5.2e-280 967.6 713 69.0
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.2e-279 966.5 706 68.6
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.0e-279 965.7 706 66.9
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.4e-279 964.5 690 67.2
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 4.8e-278 961.1 704 69.2
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 4.8e-278 961.1 704 68.8
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.2e-276 956.4 789 62.4
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 2.0e-276 955.7 707 68.6
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 4.5e-276 954.5 748 64.6
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 5.5e-274 947.6 779 61.4
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 4.7e-273 944.5 698 67.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.4e-272 943.0 708 66.0
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.2e-272 941.0 657 69.3
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.7e-270 936.0 700 67.3
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.7e-270 936.0 716 66.3
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.8e-270 935.3 706 65.7
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.8e-269 932.6 699 66.7
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 5.4e-269 931.0 709 66.0
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 7.0e-269 930.6 699 66.4
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.7e-268 928.7 701 66.9
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 2.7e-268 928.7 691 66.6
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.3e-267 925.6 704 65.9
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.5e-266 922.9 709 65.3
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.5e-266 922.9 715 66.0
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.8e-265 918.7 704 65.3
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 3.6e-265 918.3 704 64.3
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.0e-264 916.8 701 66.6
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.7e-260 902.1 700 64.3
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.1e-258 896.7 713 62.8
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 3.4e-255 885.2 760 58.7
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 7.5e-255 884.0 710 62.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 4.0e-248 861.7 587 71.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 9.8e-247 857.1 700 64.3
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.2e-245 852.0 677 62.8
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.0e-239 832.8 720 59.7
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 4.9e-238 828.2 593 67.8
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 4.1e-237 825.1 711 60.5
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 8.6e-235 817.4 714 58.1
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.6e-233 812.0 563 70.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.4e-232 810.1 548 72.3
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.7e-212 742.7 523 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 3.8e-206 722.2 692 52.5
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 4.2e-205 718.8 693 52.1
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.2e-188 664.1 744 51.7
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.2e-188 664.1 696 49.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 3.2e-173 612.8 880 41.7
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 2.0e-167 593.6 684 48.1
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 4.0e-163 579.3 444 65.8
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 4.4e-162 575.9 844 41.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.4e-147 527.7 488 54.9
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.9e-142 510.0 388 64.4
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 3.4e-138 496.5 752 42.3
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 5.2e-131 472.6 729 40.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.0e-130 470.7 743 39.7
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.8e-124 450.3 722 38.4
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 9.9e-122 441.8 810 35.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 6.0e-119 432.6 333 67.9
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.3e-110 404.8 360 58.6
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.1e-108 397.5 303 67.7
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 7.2e-72 276.2 270 53.7
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.4e-67 261.2 197 66.5
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.6e-63 248.4 199 63.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-49 202.2 162 61.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.7e-49 201.8 132 76.5
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 9.4e-40 169.5 112 73.2
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 5.0e-33 147.1 102 72.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 5.7e-29 133.7 173 51.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 7.0e-27 126.7 100 65.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 2.7e-26 124.8 111 55.0
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.3e-25 121.7 148 48.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 9.5e-24 116.3 122 51.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.0e-22 112.8 61 83.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.0e-17 94.7 82 56.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 6.2e-15 87.0 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 3.2e-11 74.7 69 55.1
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 2.5e-08 65.1 45 68.9
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 2.1e-07 62.0 40 72.5
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.8e-06 58.9 79 40.5
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 8.9e-06 56.6 58 44.8


User provided reference genes

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