Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 0.0e+00 1433.3 961 100.0
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 6.2e-228 795.0 969 64.7
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.1e-219 767.7 961 66.7
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.6e-159 567.8 952 53.0
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 8.0e-159 565.5 900 55.9
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 2.2e-156 557.4 904 51.8
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.7e-153 547.7 861 52.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.1e-152 545.0 876 56.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.9e-152 544.3 982 52.4
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 9.5e-152 542.0 865 56.5
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.2e-151 541.6 809 56.4
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.8e-150 537.7 1027 47.4
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 8.9e-150 535.4 864 51.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.0e-149 534.3 839 56.6
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 4.9e-148 529.6 1048 50.2
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 5.4e-147 526.2 864 44.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 4.6e-146 523.1 1014 48.6
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.9e-145 520.0 862 52.0
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 3.3e-144 516.9 979 49.8
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 8.1e-143 512.3 841 54.3
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 2.3e-142 510.8 893 53.4
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 5.2e-142 509.6 954 53.5
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.5e-141 508.1 989 50.2
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 2.6e-141 507.3 868 51.5
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 3.4e-141 506.9 782 58.7
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.5e-141 505.8 883 49.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 7.5e-141 505.8 859 55.3
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.8e-141 505.4 846 54.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.3e-140 505.0 905 49.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 8.3e-140 502.3 858 53.3
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 8.3e-140 502.3 961 49.3
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.2e-139 500.4 960 49.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 5.4e-139 499.6 865 53.2
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.0e-137 495.4 865 55.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.9e-137 493.4 883 54.5
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.5e-136 491.5 969 50.6
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.5e-136 491.5 895 53.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.3e-136 490.3 895 53.0
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.2e-135 488.4 926 49.2
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.6e-135 488.0 785 57.1
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 8.1e-135 485.7 864 53.7
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.1e-134 485.3 920 50.9
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.8e-134 484.6 810 57.5
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.8e-134 482.6 806 54.8
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.2e-133 481.9 916 51.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.5e-133 481.5 869 56.0
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.5e-133 481.5 798 54.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.4e-133 479.9 787 52.9
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.4e-133 479.9 935 52.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.9e-132 477.2 861 53.5
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 6.4e-132 476.1 854 52.5
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.4e-131 474.9 804 53.4
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.4e-131 474.9 786 55.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 3.2e-131 473.8 804 53.4
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 7.1e-131 472.6 929 51.0
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.1e-131 472.6 830 51.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.2e-131 472.2 787 48.9
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.7e-130 470.7 774 53.7
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 6.0e-130 469.5 1015 48.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 6.0e-130 469.5 984 50.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.8e-130 469.2 985 42.6
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-129 468.4 984 48.3
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 6.6e-129 466.1 902 51.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.1e-128 465.3 801 55.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 5.6e-128 463.0 783 53.1
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-126 458.8 969 49.6
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.2e-124 451.1 968 44.6
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 4.9e-124 449.9 797 54.0
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 6.4e-124 449.5 788 51.0
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.1e-123 448.7 793 55.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.4e-123 447.6 734 55.3
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 9.3e-123 445.7 1007 48.3
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.0e-121 442.2 770 52.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.3e-121 441.0 973 48.5
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 5.1e-121 439.9 968 50.8
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 6.6e-121 439.5 790 52.7
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.5e-120 438.3 791 51.3
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.8e-119 434.1 785 52.5
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 8.1e-119 432.6 828 48.9
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.1e-118 432.2 785 54.5
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.4e-118 431.0 781 54.5
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.9e-118 429.5 783 47.3
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 5.8e-117 426.4 874 51.4
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.3e-116 425.2 959 46.4
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.9e-116 423.3 778 52.8
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 8.4e-116 422.5 875 49.3
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 5.4e-115 419.9 982 47.8
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 5.4e-115 419.9 838 49.0
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.3e-113 415.2 840 48.1
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.3e-113 415.2 856 47.9
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 8.7e-113 412.5 969 48.3
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 1.1e-112 412.1 847 52.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.5e-112 411.8 835 51.7
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.9e-112 411.4 845 47.9
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 3.3e-112 410.6 842 47.9
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 9.6e-112 409.1 844 47.3
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 6.2e-111 406.4 806 52.7
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.4e-110 404.4 859 49.0
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.9e-107 394.8 846 50.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 4.2e-107 393.7 831 47.5
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.6e-106 391.7 854 48.8
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 3.0e-105 387.5 838 47.7
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 3.0e-105 387.5 838 47.7
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.0e-105 387.5 967 47.8
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.3e-103 382.1 773 49.5
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 6.9e-102 376.3 850 45.6
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.9e-102 376.3 968 41.7
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.0e-101 374.8 804 46.1
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.5e-98 364.0 760 46.3
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 3.0e-97 360.9 980 42.9
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.1e-95 354.8 722 48.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.8e-95 354.4 887 43.5
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.8e-94 351.7 944 44.4
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.7e-92 345.1 826 44.4
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.7e-92 345.1 692 54.5
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 2.2e-92 344.7 738 41.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.1e-86 325.9 852 46.2
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.4e-86 325.5 838 43.3
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 3.1e-86 324.3 684 49.9
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.8e-81 306.2 814 37.7
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.3e-73 281.6 282 58.2
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.8e-68 264.2 736 48.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 3.8e-68 264.2 322 53.7
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 5.9e-61 240.4 282 53.5
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 4.2e-59 234.2 581 49.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.6e-58 232.3 800 39.8
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-57 229.2 270 53.0
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.9e-52 211.5 245 54.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.9e-52 211.5 416 39.7
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 8.8e-49 199.9 369 43.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-47 194.5 313 47.9
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 6.6e-44 183.7 240 50.8
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.9e-39 167.5 458 38.4
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 5.0e-36 157.5 148 59.5
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 7.3e-35 153.7 130 62.3
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.2e-26 126.3 71 88.7
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.1e-26 125.6 665 35.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.5e-24 119.4 144 53.5
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 3.7e-23 114.8 72 79.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.2e-21 109.8 202 44.6
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 8.6e-20 103.6 96 46.9
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 5.6e-19 100.9 184 41.8
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.7e-15 89.4 92 53.3
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 7.8e-13 80.5 121 38.8
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 9.6e-11 73.6 142 33.8
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 4.7e-10 71.2 100 36.0
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 6.2e-10 70.9 71 50.7
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.9e-08 63.5 92 45.7
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 8.4e-07 60.5 94 33.0
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 8.4e-07 60.5 94 33.0
Solyc09g065080.2 Solanum lycopersicum HOM05D004266 ORTHO05D005151 1.1e-06 60.1 84 33.3
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-06 59.7 73 54.8
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 2.4e-06 58.9 89 31.5
Ca_10640_v3 Cicer arietinum L. HOM05D004266 ORTHO05D005151 3.2e-06 58.5 91 34.1
Psat6g189240 Pisum sativum HOM05D004266 ORTHO05D005151 3.2e-06 58.5 103 33.0
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 4.2e-06 58.2 81 35.8
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 4.2e-06 58.2 78 33.3
Lj5g0009681 Lotus japonicus HOM05D004266 ORTHO05D005151 5.4e-06 57.8 89 32.6
Phvul.007G085700 Phaseolus vulgaris HOM05D004266 ORTHO05D005151 5.4e-06 57.8 91 34.1
VMungo0720G1722 Vigna mungo HOM05D004266 ORTHO05D005151 5.4e-06 57.8 91 34.1
CANSAT25G1166 Cannabis sativa HOM05D004266 ORTHO05D005151 7.1e-06 57.4 81 37.0
FAN15G1722 Fragaria x ananassa HOM05D004266 ORTHO05D005151 7.1e-06 57.4 81 37.0
Glyma.10G219500 Glycine max HOM05D004266 ORTHO05D005151 7.1e-06 57.4 89 32.6
Glyma.20G172200 Glycine max HOM05D004266 ORTHO05D005151 7.1e-06 57.4 89 32.6
RcHm_v2.0_Chr6g0273401 Rosa chinensis HOM05D004266 ORTHO05D005151 7.1e-06 57.4 81 37.0
MD10G1041800 Malus domestica HOM05D004266 ORTHO05D005151 9.3e-06 57.0 81 37.0
Mapoly0070s0034 Marchantia polymorpha HOM05D004266 ORTHO05D005151 9.3e-06 57.0 87 33.3
Nitab4.5_0001207g0010 Nicotiana tabacum HOM05D004266 ORTHO05D005151 9.3e-06 57.0 89 31.5
Nitab4.5_0003229g0020 Nicotiana tabacum HOM05D004266 ORTHO05D005151 9.3e-06 57.0 89 31.5


User provided reference genes

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