Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 0.0e+00 1395.6 697 100.0
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 9.3e-282 973.4 684 74.3
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 8.1e-262 907.1 632 77.1
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.4e-242 843.2 714 62.7
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 7.9e-241 837.4 714 63.0
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 8.5e-235 817.4 700 63.4
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.4e-234 816.6 691 63.2
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.9e-234 816.2 736 60.2
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 3.2e-234 815.5 722 60.9
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.2e-233 813.5 730 60.8
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 2.7e-233 812.4 688 62.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.7e-233 812.4 736 59.5
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.7e-233 812.4 704 61.9
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.7e-231 804.7 727 59.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.3e-230 803.5 698 61.3
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.7e-230 802.0 697 61.3
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 4.8e-230 801.6 726 59.5
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 3.5e-228 795.4 704 60.5
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 7.7e-228 794.3 718 60.6
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.0e-227 793.9 703 61.5
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.7e-227 793.1 680 60.9
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.2e-227 792.7 704 60.4
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.9e-227 792.3 725 59.0
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 5.0e-227 791.6 729 59.0
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.1e-226 790.4 722 58.4
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.5e-226 790.0 731 59.6
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.5e-226 789.3 698 60.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.5e-226 789.3 708 59.2
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.2e-226 788.9 707 60.1
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 3.2e-226 788.9 707 59.1
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 2.1e-225 786.2 670 62.8
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 6.1e-225 784.6 686 61.7
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 6.1e-225 784.6 693 62.5
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.4e-224 783.5 704 60.4
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.0e-224 782.3 709 60.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 2.6e-223 779.2 722 58.2
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.4e-223 778.5 709 60.2
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 9.7e-223 777.3 691 61.1
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.3e-222 776.9 722 57.8
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.3e-222 776.9 680 61.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 2.4e-221 772.7 707 58.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 7.0e-221 771.2 705 59.1
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 7.0e-221 771.2 722 57.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 9.1e-221 770.8 710 58.6
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 9.1e-221 770.8 686 62.2
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.2e-220 770.4 720 57.9
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.5e-220 768.8 724 58.8
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.0e-219 767.3 697 59.4
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.0e-219 767.3 703 59.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.3e-219 766.9 705 59.6
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.1e-218 763.8 708 58.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 9.4e-218 760.8 719 58.3
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.7e-217 759.2 704 58.4
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 2.7e-217 759.2 704 58.5
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.4e-216 756.9 700 58.7
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.2e-215 753.8 662 61.9
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.2e-215 753.8 716 57.8
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 7.5e-215 751.1 723 58.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 8.3e-214 747.7 700 59.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 2.4e-213 746.1 695 57.4
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 7.0e-213 744.6 699 57.2
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 7.2e-210 734.6 706 59.2
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.1e-209 733.0 614 63.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 3.6e-209 732.3 687 57.1
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 6.1e-209 731.5 771 54.1
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.0e-208 730.7 781 53.1
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 5.2e-208 728.4 709 57.3
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.9e-203 712.6 690 57.4
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 3.7e-198 695.7 626 59.1
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 8.9e-192 674.5 715 52.2
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.9e-190 668.7 698 55.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 5.4e-189 665.2 525 65.5
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 9.2e-189 664.5 540 64.3
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 9.5e-186 654.4 554 62.5
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 4.7e-185 652.1 503 67.0
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.3e-184 649.8 657 56.3
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 6.8e-184 648.3 679 53.5
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.7e-182 643.7 731 51.8
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.4e-181 640.6 491 68.8
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 5.4e-181 638.6 687 52.4
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 4.6e-180 635.6 450 71.3
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 9.5e-178 627.9 697 49.9
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 4.4e-175 619.0 568 60.6
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 3.5e-172 609.4 680 48.4
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.6e-170 602.1 565 58.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 2.8e-169 599.7 697 52.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-168 597.4 685 47.9
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.2e-148 531.2 679 44.2
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.4e-143 513.1 443 61.9
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.2e-140 504.6 400 64.0
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 7.4e-138 495.4 498 55.4
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 6.5e-134 482.3 380 66.6
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 3.0e-131 473.4 344 70.3
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.9e-130 470.7 423 57.4
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.5e-122 444.5 719 38.4
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.0e-119 434.1 370 62.7
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.7e-118 431.0 376 62.0
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.8e-118 429.9 370 62.4
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 5.0e-118 429.5 786 40.8
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.6e-116 423.3 362 59.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.0e-107 395.2 826 34.0
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 4.4e-106 389.8 306 65.7
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.1e-104 383.3 664 36.7
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.5e-93 348.2 321 57.9
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.2e-87 328.6 342 53.8
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.0e-87 327.8 728 32.3
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.3e-81 308.5 315 55.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.7e-68 263.5 235 59.6
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.0e-67 260.4 206 66.5
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.0e-66 258.1 285 50.2
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 9.2e-64 249.2 658 31.0
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.5e-61 241.1 213 62.4
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 3.6e-60 237.3 171 67.3
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 7.6e-58 229.6 182 63.7
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.0e-54 219.2 191 61.3
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 3.4e-50 204.1 244 51.2
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-46 191.4 263 45.6
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.0e-46 191.0 176 57.4
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 4.0e-43 180.6 200 49.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 2.4e-40 171.4 165 57.6
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 4.9e-33 147.1 120 60.0
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 6.0e-31 140.2 133 54.1
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.3e-21 107.8 136 47.8
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.3e-21 107.5 145 44.8
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 5.7e-21 107.1 139 47.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 4.5e-18 97.4 143 44.1
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.7e-18 96.7 160 40.6
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 6.5e-17 93.6 128 45.3
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.0e-13 82.0 53 71.7
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.7e-12 77.8 77 55.8
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 8.2e-12 76.6 154 39.6
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-11 75.9 51 66.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.8e-11 75.5 76 52.6
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 9.4e-08 63.2 36 88.9


User provided reference genes

Program Settings