Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 2.2e-191 672.2 347 100.0
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.6e-91 339.7 196 91.8
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.6e-77 293.9 367 49.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.2e-73 279.6 383 47.3
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.6e-72 277.3 367 47.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 3.0e-71 273.1 366 47.0
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.5e-70 270.0 367 45.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.1e-65 254.6 376 44.9
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.6e-61 239.6 394 41.6
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.9e-58 229.2 385 42.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 2.4e-57 226.9 377 41.4
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 9.3e-57 224.9 384 41.7
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 9.3e-57 224.9 422 39.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 7.9e-56 221.9 380 39.5
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.3e-55 221.1 388 39.7
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.9e-55 219.5 380 40.3
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 3.9e-55 219.5 380 40.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 6.6e-55 218.8 376 39.1
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 8.7e-55 218.4 379 40.4
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 5.6e-54 215.7 391 38.9
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 7.3e-54 215.3 391 39.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.3e-54 215.3 391 39.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 9.6e-54 214.9 375 40.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.3e-53 214.5 380 39.7
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.3e-53 214.5 394 39.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-53 214.2 366 39.6
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.6e-53 214.2 386 38.9
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.8e-53 213.4 404 38.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.6e-53 213.0 391 38.6
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.6e-53 213.0 380 39.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.2e-53 212.2 378 39.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 6.2e-53 212.2 363 41.6
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 8.1e-53 211.8 380 40.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.4e-52 211.1 392 38.5
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.4e-52 210.3 372 40.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.1e-52 209.9 376 39.6
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 5.3e-52 209.1 366 40.7
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.3e-52 209.1 390 38.7
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 5.3e-52 209.1 391 38.9
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.9e-52 208.8 384 38.8
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 6.9e-52 208.8 393 38.9
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 9.0e-52 208.4 377 38.5
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 9.0e-52 208.4 392 38.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.0e-51 207.2 347 38.3
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.6e-51 206.8 377 38.5
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.4e-51 206.5 380 40.5
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 3.4e-51 206.5 377 38.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.4e-51 206.5 396 39.4
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.4e-51 206.5 380 38.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 4.5e-51 206.1 379 39.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 7.6e-51 205.3 376 38.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 9.9e-51 204.9 377 38.7
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 9.9e-51 204.9 348 39.7
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.3e-50 204.5 349 41.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.3e-50 204.5 377 38.2
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.7e-50 204.1 373 38.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.2e-50 203.8 373 38.1
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.2e-50 203.8 379 38.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.9e-50 203.4 371 37.2
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.9e-50 203.4 374 39.6
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.9e-50 203.4 374 38.5
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 6.4e-50 202.2 394 38.1
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 8.4e-50 201.8 349 39.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 8.4e-50 201.8 375 38.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.1e-49 201.4 377 36.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.2e-49 199.9 373 37.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 5.4e-49 199.1 384 38.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 7.1e-49 198.7 410 36.3
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.3e-49 198.4 373 38.1
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 9.3e-49 198.4 393 36.9
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.2e-48 198.0 400 37.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.6e-48 197.6 372 38.2
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.6e-48 197.6 377 36.1
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.1e-48 197.2 380 37.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.5e-48 196.4 372 38.4
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 7.9e-48 195.3 386 38.1
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.3e-47 193.7 375 39.2
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 3.0e-47 193.4 369 37.9
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.0e-47 193.4 429 35.7
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.9e-47 193.0 379 35.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 6.7e-47 192.2 376 37.2
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 4.3e-46 189.5 388 36.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.3e-45 188.0 379 37.5
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.3e-45 188.0 379 37.5
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-45 188.0 396 35.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.6e-45 187.6 374 37.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.1e-45 187.2 349 36.7
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.8e-44 184.1 376 34.3
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 5.3e-44 182.6 395 34.9
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.7e-42 177.6 403 35.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 6.5e-42 175.6 382 33.8
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 6.5e-42 175.6 345 37.1
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.9e-41 174.1 252 45.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 3.2e-41 173.3 367 34.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-40 171.4 387 35.1
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.0e-40 169.1 316 38.6
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-39 166.8 361 36.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 5.1e-39 166.0 404 32.7
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 6.7e-39 165.6 397 33.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.1e-38 164.9 354 34.7
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.3e-38 163.3 341 37.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.3e-38 162.9 393 33.6
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 5.7e-38 162.5 366 33.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.4e-38 162.2 380 35.0
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.6e-37 161.0 374 33.2
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.1e-37 160.6 393 33.3
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.4e-36 157.1 365 36.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 3.1e-36 156.8 392 33.2
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.1e-36 156.8 396 32.8
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.1e-36 156.4 352 34.1
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 5.3e-36 156.0 389 32.4
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 6.9e-36 155.6 383 32.4
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-35 154.5 352 33.2
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 7.6e-35 152.1 353 31.7
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 7.6e-35 152.1 353 31.7
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 7.6e-35 152.1 392 32.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.2e-34 150.6 353 31.4
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.2e-34 150.6 353 31.4
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.2e-34 150.6 353 31.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 2.9e-34 150.2 327 37.3
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.8e-34 149.8 382 32.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 9.3e-33 145.2 410 32.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 9.3e-33 145.2 387 31.0
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-32 144.4 386 33.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.1e-32 144.1 362 30.7
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 3.5e-32 143.3 318 32.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 4.6e-32 142.9 208 42.8
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 7.9e-32 142.1 381 29.7
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.8e-31 141.0 263 38.0
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 6.3e-29 132.5 191 42.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.0e-27 127.5 187 46.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.9e-26 123.6 382 29.1
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.1e-24 115.9 381 28.9
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.1e-24 115.9 312 30.1
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-22 111.3 98 60.2
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.2e-19 101.7 224 36.2
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-18 95.9 359 26.7
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 8.5e-18 95.5 259 32.8
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.2e-17 92.4 120 47.5
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.8e-15 87.8 187 34.8
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 2.0e-14 84.3 204 30.9
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 6.3e-13 79.3 148 32.4
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.3e-13 79.3 107 46.7
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.7e-10 71.2 167 35.3
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.7e-10 71.2 79 49.4
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 3.2e-09 67.0 119 36.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.2e-09 67.0 173 32.4
HanXRQChr14g0429711 Helianthus annuus HOM05D003625 ORTHO05D004382 2.1e-08 64.3 88 44.3
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 6.1e-08 62.8 104 41.3
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 8.0e-08 62.4 57 54.4
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 3.3e-06 57.0 178 29.2


User provided reference genes

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