Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-38 162.5 81 100.0
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.3e-33 146.0 78 94.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.0e-27 126.3 65 96.9
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 6.4e-25 117.1 65 89.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.4e-10 68.2 36 91.7
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 4.4e-10 67.8 39 82.1
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 5.8e-10 67.4 39 84.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 7.5e-10 67.0 36 88.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 7.5e-10 67.0 36 88.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 9.9e-10 66.6 51 62.7
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.3e-09 66.2 39 82.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.3e-09 66.2 39 79.5
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.3e-09 66.2 39 82.1
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.2e-09 65.5 39 82.1
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.2e-09 65.5 38 76.3
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.2e-09 65.5 36 86.1
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-09 65.1 36 86.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.7e-09 64.7 36 86.1
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.7e-09 64.7 35 88.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.7e-09 64.7 36 86.1
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 4.9e-09 64.3 36 86.1
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.9e-09 64.3 39 79.5
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 4.9e-09 64.3 39 79.5
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 6.4e-09 63.9 41 73.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 6.4e-09 63.9 36 83.3
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 8.3e-09 63.5 36 80.6
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 8.3e-09 63.5 36 83.3
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 8.3e-09 63.5 36 83.3
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.1e-08 63.2 36 83.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-08 63.2 39 76.9
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.1e-08 63.2 39 76.9
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.1e-08 63.2 39 74.4
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.4e-08 62.8 36 83.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.4e-08 62.8 32 90.6
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.4e-08 62.8 36 83.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.4e-08 62.8 36 83.3
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.9e-08 62.4 44 70.5
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.9e-08 62.4 39 74.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.9e-08 62.4 39 74.4
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.9e-08 62.4 36 80.6
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.9e-08 62.4 36 83.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.9e-08 62.4 36 80.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.9e-08 62.4 36 80.6
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.9e-08 62.4 36 80.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.4e-08 62.0 36 80.6
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.4e-08 62.0 36 80.6
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.4e-08 62.0 39 74.4
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.4e-08 62.0 39 74.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.4e-08 62.0 39 74.4
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.4e-08 62.0 44 68.2
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.4e-08 62.0 39 74.4
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.4e-08 62.0 36 77.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.2e-08 61.6 36 80.6
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 77.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 77.8
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 5.4e-08 60.8 39 74.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.4e-08 60.8 35 82.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 80.6
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 77.8
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 5.4e-08 60.8 39 74.4
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.4e-08 60.8 39 74.4
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 77.8
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 5.4e-08 60.8 36 77.8
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 7.1e-08 60.5 32 84.4
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 7.1e-08 60.5 36 77.8
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 7.1e-08 60.5 45 64.4
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 9.2e-08 60.1 36 80.6
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 9.2e-08 60.1 36 80.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 9.2e-08 60.1 56 58.9
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 9.2e-08 60.1 34 82.4
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-07 59.7 39 74.4
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.2e-07 59.7 36 75.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.6e-07 59.3 36 75.0
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.1e-07 58.9 36 77.8
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.1e-07 58.9 36 77.8
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.1e-07 58.9 36 75.0
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 2.7e-07 58.5 39 71.8
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.5e-07 58.2 36 72.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 4.6e-07 57.8 35 77.1
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 6.0e-07 57.4 36 72.2
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 6.0e-07 57.4 36 72.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 6.0e-07 57.4 43 67.4
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 6.0e-07 57.4 36 77.8
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 7.8e-07 57.0 39 69.2
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.8e-07 57.0 36 75.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-06 56.6 36 72.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.0e-06 56.6 36 72.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.0e-06 56.6 36 72.2
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.3e-06 56.2 36 69.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.3e-06 55.5 36 72.2
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 3.9e-06 54.7 51 58.8
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 6.6e-06 53.9 36 72.2


User provided reference genes

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