Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 0.0e+00 1418.7 887 100.0
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 0.0e+00 1123.6 915 76.5
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 8.4e-304 1047.0 953 70.1
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.9e-271 939.5 919 66.9
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 7.7e-265 917.5 964 63.3
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 3.2e-263 912.1 978 61.5
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.2e-257 893.6 991 60.4
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 2.0e-257 892.9 719 74.5
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 6.5e-256 887.9 971 59.7
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 8.5e-256 887.5 978 65.8
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 1.4e-253 880.2 977 58.9
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.7e-253 877.9 979 59.0
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 4.4e-252 875.2 970 58.8
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 7.4e-252 874.4 987 62.5
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 9.7e-252 874.0 985 57.7
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.2e-251 872.8 1001 59.5
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 1.1e-250 870.5 990 57.5
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.4e-250 870.2 1012 57.5
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 1.6e-249 866.7 969 59.3
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.0e-249 866.3 1034 57.2
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 3.5e-249 865.5 985 58.7
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 3.8e-248 862.1 992 58.6
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.5e-248 861.3 988 59.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 8.5e-248 860.9 982 60.1
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 8.5e-248 860.9 993 59.3
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 8.5e-248 860.9 995 59.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.5e-247 860.1 933 59.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 9.4e-247 857.4 946 61.1
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 2.1e-246 856.3 1039 57.6
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 3.6e-246 855.5 1014 60.2
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 4.7e-246 855.1 950 60.0
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.0e-245 854.0 966 59.6
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.0e-245 854.0 1025 56.1
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 3.0e-245 852.4 1005 57.7
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.6e-244 849.4 1009 58.7
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 4.4e-244 848.6 1021 55.4
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 1.3e-243 847.0 995 63.0
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.7e-243 846.7 967 59.6
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.7e-243 845.5 962 58.1
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 4.8e-243 845.1 1043 59.0
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 8.3e-243 844.3 991 56.7
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.7e-241 839.3 1059 55.5
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.7e-241 839.3 989 58.4
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 3.5e-241 839.0 955 61.8
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 4.5e-241 838.6 684 74.7
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 4.5e-241 838.6 1011 57.5
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 7.7e-241 837.8 984 58.3
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 7.7e-241 837.8 966 58.9
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.0e-240 837.4 956 61.6
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 2.9e-240 835.9 954 58.8
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 3.8e-240 835.5 966 56.8
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 5.0e-240 835.1 968 56.4
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.5e-239 832.8 958 61.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.6e-238 830.1 1033 58.5
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 2.1e-238 829.7 1030 56.6
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.6e-238 828.9 1025 58.1
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 6.1e-238 828.2 962 57.3
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 6.1e-238 828.2 988 58.2
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 6.1e-238 828.2 963 57.1
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.8e-237 826.6 958 56.9
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.8e-237 826.6 969 58.8
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.8e-237 826.6 966 58.9
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 8.8e-237 824.3 1016 56.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 1.5e-236 823.5 942 58.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.6e-236 822.8 955 57.2
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.7e-236 821.6 1035 58.4
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 7.5e-236 821.2 941 58.2
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 9.8e-236 820.8 945 58.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 1.3e-235 820.5 1024 58.3
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.7e-235 820.1 946 58.6
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 4.8e-235 818.5 972 57.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 6.3e-235 818.1 986 56.7
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 6.3e-235 818.1 965 58.1
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 2.4e-234 816.2 948 57.5
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 3.1e-234 815.8 954 58.4
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 5.4e-234 815.1 999 61.5
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 9.1e-234 814.3 1011 54.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 9.1e-234 814.3 952 58.6
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.0e-233 813.1 960 56.6
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 8.6e-232 807.7 966 58.3
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.5e-231 807.0 968 55.1
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.5e-231 806.2 967 56.3
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 2.5e-231 806.2 920 60.8
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.2e-230 803.9 738 67.8
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 2.1e-230 803.1 1148 51.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.8e-230 802.7 1011 55.6
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 3.6e-230 802.4 991 54.9
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.2e-228 797.3 991 55.1
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 2.0e-228 796.6 1024 54.3
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 5.7e-228 795.0 948 55.9
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 8.3e-227 791.2 932 57.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 3.2e-226 789.3 992 54.2
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 3.5e-225 785.8 958 55.0
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.0e-224 784.3 751 64.0
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 6.6e-224 781.6 1019 54.1
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 6.6e-224 781.6 1044 52.1
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.3e-223 778.9 991 54.5
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 5.6e-223 778.5 1024 53.4
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 3.6e-222 775.8 745 64.0
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 1.0e-221 774.2 987 52.9
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 4.0e-221 772.3 987 54.2
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.0e-217 760.0 1020 52.4
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 6.0e-217 758.4 951 56.5
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.5e-215 753.8 1025 52.7
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.2e-214 748.4 998 52.2
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 2.3e-213 746.5 1019 51.4
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 2.6e-212 743.0 915 56.5
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.9e-210 736.9 949 53.1
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.4e-210 736.5 1024 50.3
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 9.2e-210 734.6 1015 53.1
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 3.0e-208 729.6 953 52.6
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 9.5e-207 724.5 926 54.8
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 2.1e-206 723.4 1019 50.0
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 8.1e-206 721.5 723 63.2
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 8.9e-205 718.0 980 54.2
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 3.7e-203 712.6 992 52.4
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-199 701.0 979 53.2
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 3.0e-192 676.4 709 61.4
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-189 667.2 836 57.1
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 3.4e-172 609.8 481 74.8
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 4.9e-171 605.9 1033 44.5
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.5e-159 567.8 922 45.0
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.4e-157 560.5 943 42.7
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 2.2e-147 527.3 558 60.8
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 4.4e-143 513.1 750 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 7.4e-143 512.3 709 51.3
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.4e-128 464.9 827 43.8
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.3e-110 405.2 399 61.9
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 3.4e-103 380.6 744 40.2
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 9.3e-69 266.2 532 40.8
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 9.0e-56 223.0 346 50.3
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.4e-55 221.1 318 51.3
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 7.1e-53 213.4 490 40.6
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 2.1e-52 211.8 179 72.1
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 1.3e-49 202.6 137 81.8
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.1e-44 185.3 202 57.4
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.9e-42 178.7 323 41.2
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 9.7e-42 176.4 661 30.4
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 2.7e-36 158.3 361 37.7
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-35 156.4 150 68.0
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 1.4e-29 136.0 90 84.4
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 4.7e-28 131.0 185 50.3
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.9e-28 130.2 234 44.0
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 3.9e-27 127.9 87 80.5
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 8.8e-27 126.7 88 76.1
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.7e-25 121.3 354 30.8
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.1e-24 119.8 80 82.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 9.1e-24 116.7 416 32.7
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.6e-23 115.9 647 26.4
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 1.3e-22 112.8 160 50.6
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 1.7e-22 112.5 84 73.8
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.2e-22 112.1 99 66.7
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.9e-22 111.7 107 60.7
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 1.1e-21 109.8 593 28.3
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 4.7e-20 104.4 155 46.5
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.7e-20 104.4 77 76.6
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 2.3e-19 102.1 74 77.0
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.3e-19 102.1 603 24.7
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 4.0e-19 101.3 194 39.7
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 3.3e-18 98.2 63 79.4
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.1e-16 91.3 188 41.0
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 7.0e-16 90.5 60 85.0
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.9e-15 87.4 97 60.8
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-14 85.9 61 80.3
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 2.5e-13 82.0 72 68.1
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 3.2e-13 81.6 90 56.7
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 4.2e-13 81.3 411 28.0
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 4.2e-13 81.3 175 39.4
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 9.4e-13 80.1 65 69.2
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 9.4e-13 80.1 65 69.2
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.6e-12 79.3 79 64.6
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 2.1e-12 79.0 73 60.3
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 9.8e-10 70.1 71 64.8
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.8e-09 68.6 72 56.9
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 2.8e-09 68.6 44 86.4
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.8e-08 65.9 145 37.2
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 5.4e-08 64.3 362 28.2
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 1.6e-07 62.8 371 25.1


User provided reference genes

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