Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 2053.1 1137 100.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1687.2 1153 80.6
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1592.8 1152 77.8
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1474.5 1167 69.2
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1457.6 1166 70.3
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1441.0 1172 68.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1438.3 1166 69.6
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1166 69.3
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1428.7 1162 69.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1422.9 1162 68.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1418.3 1164 67.9
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1416.4 1159 67.2
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1412.9 1181 67.1
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1406.7 1163 67.9
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1405.2 1166 66.4
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1404.4 1159 69.0
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1403.3 1161 68.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1161 67.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1165 68.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1394.0 1168 66.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1390.6 1164 66.6
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1390.6 1158 68.5
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1390.2 1165 68.5
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1150 68.1
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1385.2 1152 67.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1156 65.7
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1191 66.9
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1170 66.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1381.3 1169 66.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1172 66.9
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1204 64.2
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1159 65.5
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1380.2 1162 68.0
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1380.2 1140 69.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1154 65.6
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1378.2 1175 66.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1375.9 1178 65.0
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1164 66.5
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1375.1 1167 65.1
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1372.1 1146 66.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1371.7 1168 66.9
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1371.7 1168 66.9
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1370.9 1162 66.9
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1370.9 1133 68.7
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1370.1 1157 65.3
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1183 64.6
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1368.6 1152 67.4
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1170 67.2
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1166 66.0
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1142 68.7
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1167 64.4
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1167 66.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1365.9 1182 64.4
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1362.8 1139 68.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1360.9 1159 67.1
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1357.0 1140 67.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1356.3 1140 68.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1354.3 1153 68.2
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1354.0 1153 68.3
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1353.6 1156 68.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1353.6 1153 68.3
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1352.4 1156 64.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1351.7 1155 67.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1350.9 1205 62.5
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1350.5 1159 67.1
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1350.5 1163 68.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1350.1 1170 65.5
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1349.7 1208 62.7
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1347.4 1169 63.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1346.3 1154 67.9
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1343.9 1157 66.8
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1343.9 1158 67.4
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1342.8 1160 64.4
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1205 62.9
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1335.1 1147 67.2
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1325.1 1156 65.6
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1318.9 1174 63.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1318.1 1169 65.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1313.1 1151 64.9
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1306.2 1107 67.0
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1293.5 1186 61.5
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1280.8 1167 62.1
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1273.8 1169 62.3
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1272.7 1226 60.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1270.8 1178 62.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1265.4 1165 62.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1157.9 875 71.7
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1143.6 951 70.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1098.6 1226 53.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1097.4 1044 61.9
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1086.6 1252 51.7
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 2.2e-309 1065.8 1222 52.5
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.2e-294 1016.9 735 70.3
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.1e-291 1006.1 1152 53.6
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.0e-282 977.2 929 59.5
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-256 890.6 741 64.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.7e-245 853.6 1413 42.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.5e-241 840.5 589 74.9
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 5.8e-241 838.6 589 77.6
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 8.4e-216 755.0 517 75.4
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.9e-215 753.8 517 75.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 2.0e-209 733.8 516 75.4
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 8.8e-205 718.4 620 64.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.2e-189 666.0 625 60.0
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 8.5e-176 622.1 604 60.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 2.6e-172 610.5 1168 37.2
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.1e-159 568.5 569 59.2
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.9e-155 553.9 574 56.6
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.3e-151 539.3 555 56.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.1e-141 508.8 463 62.2
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.1e-141 508.8 390 66.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 6.9e-125 453.0 553 50.3
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 4.4e-124 450.3 331 71.3
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-118 431.4 319 72.7
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.8e-109 401.7 1202 31.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 2.1e-102 378.3 483 49.5
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.0e-100 371.7 540 45.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 9.0e-93 346.3 1148 29.4
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 6.5e-91 340.1 358 52.5
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-85 322.4 382 51.3
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.8e-83 314.3 380 49.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 3.1e-77 294.7 226 71.7
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 3.5e-76 291.2 427 49.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.2e-75 288.5 376 48.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.8e-75 287.7 255 56.5
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-73 282.0 376 48.7
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.0e-72 277.7 376 47.9
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 3.3e-71 274.6 376 47.6
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.6e-68 265.8 252 59.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-65 254.2 149 86.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-64 252.7 147 85.0
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.8e-62 245.0 223 63.2
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.0e-59 236.5 142 78.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.5e-58 231.9 187 66.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.3e-54 217.2 198 56.6
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.6e-51 207.2 106 97.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-48 199.1 113 86.7
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 111 86.5
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 9.8e-47 193.4 113 85.0
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 2.2e-46 192.2 134 73.9
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-45 189.1 113 83.2
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.5e-42 179.5 589 31.6
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 2.5e-42 178.7 106 86.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 3.3e-42 178.3 109 82.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-39 169.1 99 85.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.8e-39 166.8 89 93.3
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.7e-36 158.7 97 82.5
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 7.3e-34 150.6 169 50.9
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-31 143.3 82 90.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.1e-29 134.8 123 58.5
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.0e-27 128.6 133 50.4
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 7.3e-26 124.0 85 76.5
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.1e-24 120.2 73 84.9
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 4.9e-22 111.3 72 79.2
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 2.4e-21 109.0 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 7.1e-21 107.5 75 72.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 7.1e-21 107.5 152 46.7
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.3e-19 102.4 147 47.6
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 3.6e-09 68.6 52 73.1


User provided reference genes

Program Settings