Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344631 Helianthus annuus HOM05D003056 ORTHO05D027707 7.1e-60 233.8 123 100.0
FAN25G0761 Fragaria x ananassa HOM05D002244 ORTHO05D002269 6.9e-23 110.9 113 52.2
Glyma.09G013400 Glycine max HOM05D002244 ORTHO05D002269 4.5e-22 108.2 107 50.5
MD10G1337400 Malus domestica HOM05D002244 ORTHO05D002269 1.7e-21 106.3 129 43.4
Ca_00756_v3 Cicer arietinum L. HOM05D002244 ORTHO05D002269 5.5e-20 101.3 102 48.0
FvH4_3g00440 Fragaria vesca HOM05D002244 ORTHO05D002269 1.6e-19 99.8 116 52.6
Zm00001eb421320 Zea mays HOM05D001155 ORTHO05D027707 2.7e-19 99.0 116 44.8
Medtr2g026600 Medicago truncatula HOM05D002244 ORTHO05D002269 6.1e-19 97.8 107 44.9
Actinidia37309 Actinidia chinensis HOM05D003056 ORTHO05D030957 1.9e-17 92.8 71 59.2
Psat1g174480 Pisum sativum HOM05D002244 ORTHO05D002269 1.3e-16 90.1 115 40.9
Oeu052843.2 Olea europaea HOM05D002244 ORTHO05D002269 3.7e-16 88.6 109 45.9
Nitab4.5_0001668g0140 Nicotiana tabacum HOM05D002244 ORTHO05D002269 4.8e-16 88.2 56 69.6
CDE05G1508 Ceratophyllum demersum HOM05D002244 ORTHO05D002269 1.1e-15 87.0 56 69.6
HanXRQChr13g0397421 Helianthus annuus HOM05D002244 ORTHO05D002269 2.4e-15 85.9 41 92.7
HPP92_007731 Vanilla planifolia HOM05D002244 ORTHO05D002269 5.9e-14 81.3 58 63.8
Migut.J00730 Erythranthe guttata HOM05D002244 ORTHO05D002269 3.8e-13 78.6 108 39.8
Lj6g0010986 Lotus japonicus HOM05D002244 ORTHO05D002269 5.0e-13 78.2 61 57.4
HanXRQChr17g0558121 Helianthus annuus HOM05D002244 ORTHO05D002269 8.5e-13 77.4 62 59.7
Prupe.3G138500 Prunus persica HOM05D064050 ORTHO05D027707 2.1e-11 72.8 82 40.2
CAN.G1986.8 Capsicum annuum HOM05D002244 ORTHO05D002269 3.0e-10 68.9 55 58.2
Glyma.09G013300 Glycine max HOM05D002244 ORTHO05D002269 3.0e-10 68.9 53 60.4
DCAR_020128 Daucus carota HOM05D003056 ORTHO05D003422 3.9e-10 68.6 109 36.7
Solyc09g042290.3 Solanum lycopersicum HOM05D002244 ORTHO05D002269 3.9e-10 68.6 37 75.7
TPR.G29269 Trifolium pratense HOM05D002244 ORTHO05D002269 3.9e-10 68.6 43 69.8
SGA_v2.0_scaffold49G18233 Striga asiatica HOM05D002244 ORTHO05D002269 5.1e-10 68.2 57 50.9
VMungo0540G1149 Vigna mungo HOM05D002244 ORTHO05D002269 8.8e-10 67.4 55 54.5
MD10G1338000 Malus domestica HOM05D002244 ORTHO05D002269 5.7e-09 64.7 34 79.4
TPR.G30217 Trifolium pratense HOM05D002244 ORTHO05D002269 5.7e-09 64.7 58 50.0
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 9.7e-09 63.9 106 34.0
Ca_26872_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 1.3e-08 63.5 113 33.6
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 1.3e-08 63.5 113 33.6
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 1.3e-08 63.5 103 32.0
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.7e-08 63.2 109 29.4
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 1.7e-08 63.2 113 31.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 2.2e-08 62.8 110 33.6
CsaV3_2G008490 Cucumis sativus L. HOM05D003056 ORTHO05D003422 2.8e-08 62.4 103 32.0
MD10G1163400 Malus domestica HOM05D001779 ORTHO05D001753 2.8e-08 62.4 113 31.0
Psat1g174440 Pisum sativum HOM05D002244 ORTHO05D002269 2.8e-08 62.4 55 50.9
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 2.8e-08 62.4 113 32.7
TPR.G31105 Trifolium pratense HOM05D001779 ORTHO05D001753 2.8e-08 62.4 113 33.6
GSVIVG01029248001 Vitis vinifera HOM05D003056 ORTHO05D003422 2.8e-08 62.4 92 33.7
C03p59390 Brassica napus HOM05D003056 ORTHO05D003422 3.7e-08 62.0 103 30.1
Cpa.g.sc95.42 Carica papaya HOM05D003056 ORTHO05D003422 3.7e-08 62.0 103 30.1
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 3.7e-08 62.0 113 33.6
BcaNung06913 Brassica carinata HOM05D003056 ORTHO05D003422 4.8e-08 61.6 103 29.1
BolC3t18203H Brassica oleracea HOM05D003056 ORTHO05D003422 4.8e-08 61.6 103 29.1
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 4.8e-08 61.6 89 32.6
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 6.3e-08 61.2 103 31.1
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 6.3e-08 61.2 89 33.7
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 6.3e-08 61.2 113 32.7
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 8.2e-08 60.8 106 32.1
A06p33070 Brassica napus HOM05D003056 ORTHO05D003422 8.2e-08 60.8 103 29.1
BraA06t26237Z Brassica rapa HOM05D003056 ORTHO05D003422 8.2e-08 60.8 103 29.1
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 8.2e-08 60.8 113 31.9
Cc01_g16940 Coffea canephora HOM05D001779 ORTHO05D001753 8.2e-08 60.8 113 31.9
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 8.2e-08 60.8 113 31.0
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 8.2e-08 60.8 107 32.7
Sed0009936 Sechium edule HOM05D003056 ORTHO05D003422 8.2e-08 60.8 89 33.7
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 1.1e-07 60.5 109 31.2
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.1e-07 60.5 109 33.0
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.4e-07 60.1 106 32.1
Glyma.15G118200 Glycine max HOM05D002244 ORTHO05D002269 1.4e-07 60.1 54 51.9
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 1.4e-07 60.1 89 31.5
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 1.4e-07 60.1 89 31.5
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 1.4e-07 60.1 89 31.5
Prupe.8G201700 Prunus persica HOM05D001779 ORTHO05D001753 1.4e-07 60.1 113 29.2
Sed0015503 Sechium edule HOM05D001779 ORTHO05D001753 1.4e-07 60.1 114 30.7
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.8e-07 59.7 104 27.9
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 1.8e-07 59.7 84 34.5
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.8e-07 59.7 106 31.1
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 1.8e-07 59.7 98 30.6
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.8e-07 59.7 115 26.1
Thecc.09G174700 Theobroma cacao HOM05D003056 ORTHO05D003422 1.8e-07 59.7 89 33.7
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 1.8e-07 59.7 113 31.9
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.4e-07 59.3 104 27.9
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 2.4e-07 59.3 106 31.1
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 2.4e-07 59.3 114 29.8
Duzib150G0731 Durio zibethinus HOM05D003056 ORTHO05D003422 2.4e-07 59.3 89 31.5
Glyma.15G162500 Glycine max HOM05D003056 ORTHO05D003422 2.4e-07 59.3 98 31.6
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 2.4e-07 59.3 91 30.8
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 3.1e-07 58.9 89 32.6
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 3.1e-07 58.9 106 31.1
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 3.1e-07 58.9 103 28.2
Cfa013401 Carpinus fangiana HOM05D003056 ORTHO05D003422 4.1e-07 58.5 89 32.6
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 4.1e-07 58.5 114 29.8
Manes.12G045500 Manihot esculenta HOM05D001779 ORTHO05D001753 4.1e-07 58.5 106 31.1
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 4.1e-07 58.5 103 28.2
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 4.1e-07 58.5 103 28.2
QL09p053959 Quercus lobata HOM05D001779 ORTHO05D001753 4.1e-07 58.5 113 30.1
Sed0013425 Sechium edule HOM05D002244 ORTHO05D002269 4.1e-07 58.5 87 48.3
Cc07_g18180 Coffea canephora HOM05D002244 ORTHO05D002269 5.3e-07 58.2 37 64.9
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 5.3e-07 58.2 113 29.2
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 5.3e-07 58.2 91 28.6
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 7.0e-07 57.8 113 31.0
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 7.0e-07 57.8 104 26.9
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 7.0e-07 57.8 114 28.9
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 7.0e-07 57.8 113 31.9
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 9.1e-07 57.4 106 31.1
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 9.1e-07 57.4 113 30.1
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 9.1e-07 57.4 103 27.2
Thhalv10022551m.g Eutrema salsugineum HOM05D003056 ORTHO05D003422 9.1e-07 57.4 103 28.2
Lju50C4T14 Lonicera japonica HOM05D003056 ORTHO05D003422 9.1e-07 57.4 84 31.0
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 9.1e-07 57.4 106 29.2
Haze_21943 Corylus avellana HOM05D003056 ORTHO05D003422 1.2e-06 57.0 89 31.5
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.2e-06 57.0 112 29.5
Lalb_Chr15g0084001 Lupinus albus HOM05D003056 ORTHO05D003422 1.2e-06 57.0 84 32.1
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.2e-06 57.0 113 29.2
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 1.5e-06 56.6 103 28.2
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 1.5e-06 56.6 113 29.2
Sabra06G0013300 Salix brachista HOM05D002244 ORTHO05D002269 1.5e-06 56.6 27 92.6
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 2.0e-06 56.2 113 31.9
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 2.0e-06 56.2 106 30.2
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 2.0e-06 56.2 106 30.2
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 2.0e-06 56.2 114 28.9
Dinv19555 Davidia involucrata HOM05D003056 ORTHO05D003422 2.0e-06 56.2 87 32.2
Duzib150G1593 Durio zibethinus HOM05D003056 ORTHO05D003422 2.0e-06 56.2 89 31.5
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-06 56.2 106 31.1
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-06 56.2 106 31.1
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.0e-06 56.2 106 31.1
Lj6A353T84 Lonicera japonica HOM05D001779 ORTHO05D001753 2.0e-06 56.2 107 29.9
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 2.0e-06 56.2 113 31.0
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 2.0e-06 56.2 113 30.1
PGR044G1326 Punica granatum HOM05D001779 ORTHO05D001753 2.0e-06 56.2 114 40.4
VMungo0464G0716 Vigna mungo HOM05D003056 ORTHO05D003422 2.0e-06 56.2 98 29.6
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 2.6e-06 55.8 115 24.3
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.6e-06 55.8 115 24.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.6e-06 55.8 115 24.3
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 2.6e-06 55.8 114 29.8
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 2.6e-06 55.8 106 30.2
Lalb_Chr21g0308181 Lupinus albus HOM05D003056 ORTHO05D003422 2.6e-06 55.8 106 24.5
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 2.6e-06 55.8 113 28.3
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.6e-06 55.8 113 29.2
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 3.4e-06 55.5 89 30.3
ATR0661G573 Amborella trichopoda HOM05D003056 ORTHO05D003422 3.4e-06 55.5 106 27.4
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 3.4e-06 55.5 113 31.9
CiPaw.08G035000 Carya illinoinensis HOM05D003056 ORTHO05D003422 3.4e-06 55.5 104 27.9
Duzib138G0054 Durio zibethinus HOM05D001779 ORTHO05D001753 3.4e-06 55.5 106 31.1
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 3.4e-06 55.5 89 30.3
Lj6g0004675 Lotus japonicus HOM05D003056 ORTHO05D003422 3.4e-06 55.5 89 29.2
Manes.06G022500 Manihot esculenta HOM05D003056 ORTHO05D003422 3.4e-06 55.5 92 30.4
Oeu030465.1 Olea europaea HOM05D001779 ORTHO05D001753 3.4e-06 55.5 107 29.9
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 3.4e-06 55.5 84 33.3
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 3.4e-06 55.5 103 29.1
THA.LOC104804489 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.4e-06 55.5 89 30.3
TPR.G10585 Trifolium pratense HOM05D002244 ORTHO05D002269 3.4e-06 55.5 50 52.0
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 4.5e-06 55.1 92 30.4
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 4.5e-06 55.1 106 29.2
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.5e-06 55.1 113 29.2
Manes.14G156601 Manihot esculenta HOM05D003056 ORTHO05D003422 4.5e-06 55.1 103 28.2
Aqoxy7G02351 Aquilegia oxysepala HOM05D003056 ORTHO05D003422 5.9e-06 54.7 89 28.1
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 5.9e-06 54.7 106 29.2
AUR62021315 Chenopodium quinoa HOM05D003056 ORTHO05D003422 5.9e-06 54.7 84 31.0
AUR62033232 Chenopodium quinoa HOM05D003056 ORTHO05D003422 5.9e-06 54.7 84 31.0
MELO3C004009.2 Cucumis melo HOM05D003056 ORTHO05D003422 5.9e-06 54.7 103 39.8
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 5.9e-06 54.7 84 29.8
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 5.9e-06 54.7 113 30.1
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis HOM05D003056 ORTHO05D003422 7.7e-06 54.3 122 27.0
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 7.7e-06 54.3 118 26.3
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 7.7e-06 54.3 89 29.2
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.7e-06 54.3 118 26.3
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.7e-06 54.3 118 26.3
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 7.7e-06 54.3 107 30.8
Lj6A358T55 Lonicera japonica HOM05D001779 ORTHO05D001753 7.7e-06 54.3 113 29.2
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 7.7e-06 54.3 103 28.2
PGR044G1733 Punica granatum HOM05D003056 ORTHO05D003422 7.7e-06 54.3 89 30.3
Sc05g0000680 Simmondsia chinensis HOM05D003056 ORTHO05D003422 7.7e-06 54.3 87 33.3


User provided reference genes

Program Settings