Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 4.8e-171 604.4 298 100.0
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.7e-148 527.7 293 88.1
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 9.8e-148 526.9 300 87.7
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.9e-144 515.0 298 84.2
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 2.0e-140 502.7 298 81.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 7.5e-140 500.7 298 81.9
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.3e-139 500.0 298 82.9
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 1.1e-138 496.9 298 81.2
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.1e-138 495.0 299 81.3
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 9.2e-138 493.8 299 81.3
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.6e-137 493.0 299 80.6
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 80.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.1e-135 486.9 293 81.6
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 2.5e-135 485.7 299 79.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 3.3e-135 485.3 298 79.9
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 7.3e-135 484.2 298 78.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 2.1e-134 482.6 298 78.2
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 2.8e-134 482.3 309 78.0
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.8e-134 482.3 298 80.9
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 4.7e-134 481.5 300 77.7
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 4.7e-134 481.5 298 78.9
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 6.2e-134 481.1 297 77.1
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 78.5
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 78.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 76.8
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 79.2
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.1e-133 480.3 298 80.2
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.8e-133 479.6 302 78.8
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.2e-132 476.9 298 78.5
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 1.2e-132 476.9 302 78.8
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.5e-132 476.5 302 78.8
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 2.0e-132 476.1 298 78.2
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 2.6e-132 475.7 298 77.5
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 3.4e-132 475.3 300 78.7
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 4.4e-132 474.9 298 77.9
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 5.8e-132 474.6 298 77.5
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.5e-132 474.2 302 77.8
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.7e-131 473.0 299 77.3
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.7e-131 473.0 298 77.2
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 2.2e-131 472.6 301 77.1
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.9e-131 472.2 301 77.4
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 2.9e-131 472.2 300 77.7
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 2.9e-131 472.2 298 77.9
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 3.7e-131 471.9 298 75.8
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 3.7e-131 471.9 298 77.5
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 77.2
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.9e-131 471.5 299 76.9
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 6.4e-131 471.1 302 78.5
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 8.3e-131 470.7 331 71.6
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 8.3e-131 470.7 298 77.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.1e-130 470.3 298 77.5
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.9e-130 469.5 299 77.3
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 7.1e-130 467.6 299 77.9
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 1.3e-128 463.4 301 76.1
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 1.3e-128 463.4 298 75.8
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 5.1e-128 461.5 298 75.8
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 6.6e-128 461.1 298 76.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 6.6e-128 461.1 329 70.5
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.1e-127 460.3 302 76.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 2.5e-127 459.1 298 75.2
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 2.5e-127 459.1 297 75.4
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 3.3e-127 458.8 301 76.1
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.3e-127 457.6 298 76.2
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 9.5e-127 457.2 300 75.7
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.6e-126 456.4 300 75.3
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.8e-126 455.7 291 75.6
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 74.9
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.6e-126 455.3 298 73.5
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 4.7e-126 454.9 291 74.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 6.2e-126 454.5 291 74.6
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 6.2e-126 454.5 291 74.6
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 6.2e-126 454.5 291 74.6
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 6.2e-126 454.5 298 73.5
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 6.2e-126 454.5 298 75.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 8.1e-126 454.1 298 73.2
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 8.1e-126 454.1 333 70.0
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.2e-125 451.4 311 73.6
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 74.6
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 5.8e-124 448.0 298 73.2
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.8e-124 448.0 285 77.5
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.7e-123 446.4 298 74.8
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 2.1e-121 439.5 281 78.6
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 3.0e-120 435.6 268 81.7
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 3.6e-118 428.7 239 85.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.6e-118 428.7 298 74.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 8.1e-118 427.6 249 82.7
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.4e-116 421.8 292 70.5
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 3.8e-115 418.7 279 74.2
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 7.8e-113 411.0 270 77.0
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.9e-112 408.7 291 69.1
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 7.3e-111 404.4 267 73.4
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.4e-109 400.2 294 68.0
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 3.1e-109 399.1 237 80.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 5.4e-106 388.3 241 78.4
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 2.3e-104 382.9 222 83.3
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.1e-103 380.6 247 76.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 6.9e-101 371.3 238 75.6
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 9.6e-95 350.9 294 59.5
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.3e-91 340.5 287 59.2
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.9e-91 339.3 295 58.0
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.3e-88 329.7 410 47.1
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 5.7e-87 325.1 282 65.6
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 5.0e-83 312.0 208 72.6
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.7e-68 261.5 246 56.5
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 8.5e-59 231.5 258 55.4
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 8.8e-56 221.5 292 41.1
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-55 221.1 153 74.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 5.9e-52 208.8 241 44.8
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 2.9e-51 206.5 190 56.8
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.2e-50 203.0 117 76.1
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 3.0e-48 196.4 119 79.8
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 7.5e-47 191.8 111 85.6
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.9e-43 179.9 224 49.6
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 3.1e-37 159.8 178 52.2
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 3.8e-35 152.9 235 40.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 2.2e-30 137.1 75 82.7
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 5.0e-27 125.9 82 76.8
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.2e-21 106.7 65 80.0
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 4.1e-21 106.3 52 94.2
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 1.1e-18 98.2 52 82.7
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 6.2e-17 92.4 54 75.9
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 1.5e-15 87.8 52 75.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.2e-14 84.0 55 72.7
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 2.7e-12 77.0 59 64.4
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.5e-12 76.6 54 70.4
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 6.6e-11 72.4 109 38.5
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-10 71.6 59 62.7
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 3.6e-09 66.6 164 31.7
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 8.1e-09 65.5 183 30.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 1.5e-07 61.2 171 30.4
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 2.6e-07 60.5 172 28.5
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 4.4e-07 59.7 82 47.6
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 7.6e-07 58.9 28 85.7
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.7e-06 57.8 37 75.7
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 1.7e-06 57.8 166 30.1
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 8.4e-06 55.5 52 53.8
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 8.4e-06 55.5 52 53.8
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 8.4e-06 55.5 81 44.4


User provided reference genes

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