Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-47 191.8 87 100.0
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-22 108.6 75 68.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 2.7e-21 105.1 74 66.2
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 4.6e-21 104.4 74 67.6
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 7.8e-21 103.6 74 66.2
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.8e-21 103.6 74 66.2
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 7.8e-21 103.6 74 66.2
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.3e-20 102.8 74 66.2
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 1.3e-20 102.8 75 65.3
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.3e-20 102.8 74 66.2
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.3e-20 102.8 74 66.2
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 1.7e-20 102.4 74 64.9
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.3e-20 102.1 74 64.9
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.3e-20 102.1 74 64.9
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.3e-20 102.1 74 66.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.3e-20 102.1 74 66.2
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 3.0e-20 101.7 72 66.7
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 3.0e-20 101.7 74 67.6
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 3.0e-20 101.7 74 64.9
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 3.0e-20 101.7 74 64.9
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 3.9e-20 101.3 72 66.7
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 3.9e-20 101.3 72 66.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.9e-20 101.3 74 64.9
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 5.1e-20 100.9 74 64.9
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 5.1e-20 100.9 77 61.0
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 8.6e-20 100.1 74 63.5
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 8.6e-20 100.1 72 65.3
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-19 99.8 73 64.4
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.1e-19 99.8 74 66.2
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-19 99.8 73 64.4
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 1.1e-19 99.8 75 62.7
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.1e-19 99.8 73 63.0
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.5e-19 99.4 74 62.2
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.5e-19 99.4 74 62.2
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.9e-19 99.0 73 64.4
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.9e-19 99.0 74 60.8
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 3.3e-19 98.2 74 63.5
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.3e-19 98.2 74 62.2
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.3e-19 98.2 72 62.5
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.3e-19 98.2 71 64.8
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 3.3e-19 98.2 73 60.3
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 4.3e-19 97.8 77 62.3
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 5.6e-19 97.4 72 65.3
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 1.2e-18 96.3 74 62.2
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.2e-18 96.3 74 62.2
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.2e-18 96.3 73 61.6
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.2e-18 96.3 76 57.9
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.6e-18 95.9 74 63.5
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.6e-18 95.9 74 62.2
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 1.6e-18 95.9 74 59.5
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 1.6e-18 95.9 74 60.8
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.1e-18 95.5 75 62.7
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-18 95.1 74 62.2
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-18 95.1 74 62.2
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-18 95.1 74 62.2
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-18 95.1 74 62.2
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.8e-18 95.1 74 62.2
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.6e-18 94.7 74 60.8
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.6e-18 94.7 74 62.2
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.7e-18 94.4 74 59.5
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 4.7e-18 94.4 72 61.1
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 4.7e-18 94.4 74 60.8
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 4.7e-18 94.4 78 57.7
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 6.2e-18 94.0 81 58.0
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.1e-18 93.6 77 58.4
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-17 93.2 74 60.8
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-17 93.2 76 56.6
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.1e-17 93.2 76 56.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-17 93.2 76 56.6
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.1e-17 93.2 76 56.6
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 1.4e-17 92.8 75 61.3
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.4e-17 92.8 72 62.5
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.4e-17 92.8 72 62.5
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.8e-17 92.4 75 60.0
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 3.1e-17 91.7 72 63.9
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 5.2e-17 90.9 72 61.1
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 5.2e-17 90.9 75 60.0
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 90.9 68 64.7
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 90.9 68 64.7
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 90.9 68 64.7
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 90.9 68 64.7
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 90.9 68 64.7
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.8e-17 90.5 72 59.7
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 8.9e-17 90.1 71 60.6
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-16 89.7 71 63.4
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.5e-16 89.4 73 58.9
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.5e-16 89.4 73 58.9
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.5e-16 89.4 75 58.7
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.5e-16 89.4 75 58.7
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.5e-16 89.4 75 58.7
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.0e-16 89.0 67 64.2
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.0e-16 89.0 67 64.2
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.0e-16 89.0 67 64.2
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.0e-16 89.0 67 64.2
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.0e-16 89.0 67 64.2
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-16 88.2 75 58.7
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 9.9e-16 86.7 62 64.5
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.3e-15 86.3 77 58.4
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.3e-15 86.3 77 55.8
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.7e-15 85.9 75 57.3
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.8e-15 84.7 69 59.4
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 6.4e-15 84.0 75 57.3
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.4e-14 82.8 59 62.7
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 4.2e-14 81.3 57 64.9
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.4e-14 80.9 63 58.7
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.4e-14 80.9 59 61.0
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 9.2e-14 80.1 59 66.1
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 6.0e-13 77.4 61 62.3
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-12 76.6 64 59.4
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.3e-12 75.5 63 60.3
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.0e-12 75.1 45 73.3
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 3.9e-12 74.7 81 50.6
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.6e-12 73.9 48 68.8
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.7e-12 73.6 48 70.8
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 8.7e-12 73.6 47 70.2
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.1e-11 73.2 60 55.0
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 5.6e-11 70.9 62 59.7
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 4.8e-10 67.8 40 75.0
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 8.1e-10 67.0 51 58.8
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 6.9e-09 63.9 50 60.0
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-08 62.8 59 50.8
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 3.4e-08 61.6 60 55.0
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.7e-07 59.3 75 45.3
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-07 58.2 35 77.1
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.8e-07 58.2 33 72.7
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.1e-06 56.6 72 38.9
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.1e-06 56.6 82 40.2
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 1.1e-06 56.6 54 48.1
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-06 56.2 39 66.7
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.9e-06 55.8 33 75.8
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.9e-06 55.8 33 75.8
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.4e-06 54.3 37 64.9


User provided reference genes

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