Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 2.3e-81 305.4 146 100.0
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 9.5e-80 300.1 146 97.9
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 3.6e-79 298.1 146 97.3
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 7.6e-53 210.7 102 99.0
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 9.3e-43 177.2 90 94.4
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 3.0e-41 172.2 86 95.3
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.5e-40 169.1 86 93.0
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 9.7e-40 167.2 86 91.9
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 6.3e-39 164.5 86 88.4
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 1.2e-37 160.2 86 88.4
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 1.5e-37 159.8 86 86.0
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 4.5e-37 158.3 86 84.9
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 5.9e-37 157.9 86 84.9
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 7.7e-37 157.5 86 84.9
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.0e-36 157.1 86 84.9
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.0e-36 157.1 86 84.9
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.0e-36 157.1 86 83.7
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 1.3e-36 156.8 86 84.9
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.3e-36 156.8 86 82.6
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 2.2e-36 156.0 86 83.7
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 2.9e-36 155.6 86 84.9
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 3.8e-36 155.2 86 83.7
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 3.8e-36 155.2 87 81.6
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 3.8e-36 155.2 86 82.6
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 3.8e-36 155.2 86 82.6
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 5.0e-36 154.8 86 82.6
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 6.5e-36 154.5 86 83.7
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 6.5e-36 154.5 86 82.6
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 82.6
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 81.4
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 83.7
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 82.6
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 82.6
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 8.5e-36 154.1 86 82.6
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 81.4
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 81.4
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 81.4
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 81.4
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 81.4
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 82.6
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 1.1e-35 153.7 86 82.6
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 1.9e-35 152.9 86 81.4
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 2.5e-35 152.5 86 80.2
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.5e-35 152.5 86 82.6
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 3.2e-35 152.1 86 82.6
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 3.2e-35 152.1 86 80.2
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 4.2e-35 151.8 86 80.2
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 4.2e-35 151.8 86 82.6
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 4.2e-35 151.8 86 81.4
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 5.5e-35 151.4 86 80.2
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 7.2e-35 151.0 86 80.2
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 7.2e-35 151.0 86 80.2
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 9.4e-35 150.6 86 80.2
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 9.4e-35 150.6 86 81.4
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 9.4e-35 150.6 86 80.2
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 1.2e-34 150.2 86 81.4
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 1.2e-34 150.2 86 80.2
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 1.6e-34 149.8 86 80.2
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.6e-34 149.8 86 80.2
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.6e-34 149.8 86 80.2
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 1.6e-34 149.8 86 80.2
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 2.1e-34 149.4 86 80.2
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 2.1e-34 149.4 86 79.1
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 2.7e-34 149.1 86 79.1
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 2.7e-34 149.1 86 79.1
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 2.7e-34 149.1 86 80.2
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 2.7e-34 149.1 86 80.2
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 3.6e-34 148.7 86 79.1
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 3.6e-34 148.7 86 79.1
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 3.6e-34 148.7 86 76.7
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 4.6e-34 148.3 86 81.4
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 4.6e-34 148.3 86 79.1
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 4.6e-34 148.3 86 79.1
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 4.6e-34 148.3 86 80.2
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 4.6e-34 148.3 86 79.1
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 6.1e-34 147.9 86 77.9
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 7.9e-34 147.5 86 77.9
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 7.9e-34 147.5 86 77.9
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 7.9e-34 147.5 86 77.9
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 1.0e-33 147.1 86 79.1
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 1.0e-33 147.1 86 79.1
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 1.0e-33 147.1 86 77.9
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 1.4e-33 146.7 86 81.4
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.8e-33 146.4 86 79.1
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 2.3e-33 146.0 86 77.9
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 3.0e-33 145.6 84 79.8
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 76.7
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 77.9
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 77.9
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 75.6
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 77.9
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 3.9e-33 145.2 86 76.7
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 5.1e-33 144.8 86 79.1
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 6.7e-33 144.4 86 79.1
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.8e-33 144.1 84 78.6
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.5e-32 143.3 86 77.9
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 1.9e-32 142.9 86 75.6
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.9e-32 142.9 84 78.6
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 2.5e-32 142.5 86 75.6
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 2.5e-32 142.5 86 75.6
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 3.3e-32 142.1 86 74.4
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.7e-32 141.4 84 77.4
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.7e-32 141.4 84 77.4
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.7e-32 141.4 84 78.6
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.7e-32 141.4 84 78.6
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.7e-32 141.4 84 78.6
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 7.4e-32 141.0 86 74.4
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 7.4e-32 141.0 86 76.7
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 9.7e-32 140.6 86 74.4
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 9.7e-32 140.6 86 74.4
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 9.7e-32 140.6 88 76.1
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 9.7e-32 140.6 98 68.4
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 9.7e-32 140.6 86 74.4
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.3e-31 140.2 86 76.7
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 1.3e-31 140.2 86 76.7
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 1.3e-31 140.2 86 76.7
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 1.3e-31 140.2 86 76.7
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 1.3e-31 140.2 86 76.7
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 1.7e-31 139.8 86 76.7
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 2.2e-31 139.4 86 74.4
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.8e-31 139.0 86 74.4
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 75.6
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 75.6
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 75.6
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 75.6
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 75.6
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 74.4
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 3.7e-31 138.7 86 74.4
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 4.8e-31 138.3 86 75.6
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 4.8e-31 138.3 86 74.4
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 4.8e-31 138.3 86 73.3
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 6.3e-31 137.9 86 73.3
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 6.3e-31 137.9 86 73.3
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 6.3e-31 137.9 86 73.3
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 6.3e-31 137.9 86 75.6
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 1.1e-30 137.1 86 74.4
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 1.1e-30 137.1 86 74.4
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 1.1e-30 137.1 105 65.7
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 2.4e-30 136.0 86 72.1
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 4.1e-30 135.2 86 72.1
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 4.1e-30 135.2 86 70.9
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 2.0e-29 132.9 86 68.6
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 1.3e-28 130.2 86 72.1
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 1.3e-28 130.2 87 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 3.8e-28 128.6 86 65.1
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 6.5e-28 127.9 75 80.0
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 1.1e-27 127.1 86 67.4
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 1.9e-27 126.3 87 66.7
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 1.6e-26 123.2 86 66.3
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 3.6e-26 122.1 85 65.9
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 1.0e-25 120.6 68 80.9
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 3.0e-25 119.0 86 68.6
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 8.8e-25 117.5 86 61.6
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 9.7e-24 114.0 86 62.8
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 4.8e-23 111.7 59 88.1
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 7.7e-21 104.4 82 63.4
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 1.7e-20 103.2 86 55.8
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 9.4e-19 97.4 85 60.0
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 2.4e-14 82.8 86 48.8
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 3.1e-14 82.4 80 52.5
Sopen02g032430 Solanum pennellii HOM05D003321 ORTHO05D051122 7.0e-14 81.3 66 56.1
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 1.6e-13 80.1 70 52.9
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 6.5e-12 74.7 70 50.0
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 1.8e-09 66.6 53 58.5
Solyc02g087680.1 Solanum lycopersicum HOM05D003321 ORTHO05D051122 2.0e-08 63.2 46 63.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.7e-08 61.6 31 87.1
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 3.7e-07 58.9 37 73.0
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 4.8e-07 58.5 34 76.5
HanXRQChr17g0550931 Helianthus annuus HOM05D003321 ORTHO05D224906 2.4e-06 56.2 25 100.0
Hma1.2p1_0235F.1_g098910 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 4.1e-06 55.5 52 59.6


User provided reference genes

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