Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 9.5e-85 317.0 183 100.0
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 3.1e-27 125.9 84 82.1
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.3e-25 120.6 100 67.0
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 8.4e-25 117.9 84 75.0
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-24 117.5 83 75.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-24 117.5 100 65.0
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.1e-24 117.5 84 75.0
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.4e-24 117.1 84 75.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.4e-24 117.1 83 74.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 1.9e-24 116.7 84 75.0
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.4e-24 116.3 84 73.8
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 2.4e-24 116.3 84 73.8
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 3.2e-24 115.9 84 73.8
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 3.2e-24 115.9 84 73.8
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 3.2e-24 115.9 84 72.6
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 72.6
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 72.6
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 72.6
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 73.8
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 73.8
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 4.2e-24 115.5 84 73.8
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.5e-24 115.2 84 72.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 5.5e-24 115.2 84 72.6
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 5.5e-24 115.2 84 72.6
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.5e-24 115.2 84 72.6
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 5.5e-24 115.2 84 73.8
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 7.1e-24 114.8 86 73.3
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 7.1e-24 114.8 83 73.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.1e-24 114.8 83 73.5
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 7.1e-24 114.8 83 73.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 7.1e-24 114.8 84 72.6
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 73.8
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 9.3e-24 114.4 83 73.5
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 71.4
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 9.3e-24 114.4 84 72.6
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.2e-23 114.0 84 72.6
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 1.2e-23 114.0 84 72.6
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 1.2e-23 114.0 84 71.4
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.2e-23 114.0 84 71.4
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 1.2e-23 114.0 84 72.6
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 1.6e-23 113.6 84 71.4
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.6e-23 113.6 84 71.4
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 1.6e-23 113.6 84 71.4
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 1.6e-23 113.6 84 71.4
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 1.6e-23 113.6 83 72.3
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.6e-23 113.6 84 71.4
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 71.4
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 71.4
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 72.6
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.1e-23 113.2 83 72.3
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 72.6
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 72.6
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 71.4
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.1e-23 113.2 84 73.8
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 2.7e-23 112.8 84 71.4
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.7e-23 112.8 84 71.4
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 2.7e-23 112.8 84 71.4
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 3.5e-23 112.5 84 71.4
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.5e-23 112.5 83 73.5
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.5e-23 112.5 84 71.4
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.6e-23 112.1 84 73.8
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 4.6e-23 112.1 84 70.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 6.0e-23 111.7 83 71.1
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 6.0e-23 111.7 83 71.1
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 6.0e-23 111.7 84 69.0
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 7.9e-23 111.3 83 71.1
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 7.9e-23 111.3 83 71.1
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 7.9e-23 111.3 84 70.2
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 1.3e-22 110.5 84 69.0
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.3e-22 110.5 84 70.2
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 3.0e-22 109.4 84 70.2
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 3.0e-22 109.4 83 71.1
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.0e-22 109.4 83 69.9
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 3.0e-22 109.4 84 67.9
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 3.9e-22 109.0 84 67.9
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 5.1e-22 108.6 84 70.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 6.7e-22 108.2 84 71.4
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 8.7e-22 107.8 84 71.4
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 8.7e-22 107.8 84 71.4
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 8.7e-22 107.8 84 70.2
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 8.7e-22 107.8 84 70.2
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.1e-21 107.5 84 69.0
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 2.5e-21 106.3 84 69.0
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.5e-21 106.3 83 68.7
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 3.3e-21 105.9 84 69.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 5.6e-21 105.1 84 69.0
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 5.6e-21 105.1 84 66.7
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.6e-20 103.6 84 69.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.6e-20 103.6 84 67.9
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.1e-20 103.2 84 66.7
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 4.8e-20 102.1 84 66.7
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 6.2e-20 101.7 84 66.7
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.1e-19 100.9 81 69.1
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 3.1e-19 99.4 84 66.7
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.0e-19 99.0 111 55.0
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 5.3e-19 98.6 84 66.7
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.5e-18 97.1 74 71.6
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 3.4e-18 95.9 84 65.5
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 7.6e-18 94.7 84 58.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.7e-17 93.6 84 61.9
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.9e-17 92.8 84 61.9
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.9e-17 92.8 84 57.1
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.8e-17 92.4 84 58.3
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.9e-17 92.0 83 62.7
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 6.5e-17 91.7 97 58.8
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.1e-16 90.9 84 60.7
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.1e-16 90.9 84 60.7
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.1e-16 90.9 84 60.7
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.1e-16 90.9 84 60.7
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.1e-16 90.9 84 60.7
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.9e-16 90.1 84 59.5
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.2e-16 89.4 83 59.0
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 5.5e-16 88.6 84 59.5
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 7.1e-16 88.2 62 74.2
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.3e-14 83.2 84 57.1
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 6.7e-14 81.6 71 66.2
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 1.1e-13 80.9 84 50.0
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.9e-13 80.1 83 55.4
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.3e-13 79.3 84 54.8
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 5.7e-13 78.6 82 54.9
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 2.2e-12 76.6 58 70.7
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 6.3e-12 75.1 61 65.6
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 9.0e-11 71.2 57 64.9
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.2e-10 70.9 83 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.4e-10 69.3 83 50.6
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 4.5e-10 68.9 55 63.6
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-09 67.4 62 61.3
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-09 67.4 62 61.3
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.3e-09 67.4 56 60.7
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.7e-09 67.0 69 59.4
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 2.5e-08 63.2 63 52.4
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 2.5e-08 63.2 62 54.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.5e-08 62.0 84 48.8


User provided reference genes

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