Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325861 Helianthus annuus HOM05D002762 ORTHO05D004643 2.0e-52 208.8 103 100.0
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 6.4e-38 160.6 87 85.1
HanXRQChr11g0325851 Helianthus annuus HOM05D002762 ORTHO05D004643 5.6e-34 147.5 80 88.8
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 8.1e-33 143.7 86 77.9
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 2.2e-30 135.6 86 75.6
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 3.2e-29 131.7 86 70.9
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 2.7e-28 128.6 83 73.5
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 7.8e-28 127.1 86 68.6
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 1.7e-27 125.9 86 69.8
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 2.3e-27 125.6 86 67.4
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 6.6e-27 124.0 82 70.7
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 1.1e-26 123.2 86 66.3
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 1.1e-26 123.2 93 60.2
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 1.5e-26 122.9 82 69.5
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 1.5e-26 122.9 86 66.3
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 1.5e-26 122.9 81 66.7
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 2.5e-26 122.1 86 67.4
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 3.3e-26 121.7 86 62.8
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 3.3e-26 121.7 86 66.3
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 4.3e-26 121.3 104 54.8
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 4.3e-26 121.3 104 54.8
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 4.3e-26 121.3 86 66.3
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 5.6e-26 120.9 86 67.4
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 5.6e-26 120.9 82 67.1
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 5.6e-26 120.9 82 67.1
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 5.6e-26 120.9 86 64.0
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 7.3e-26 120.6 86 64.0
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 7.3e-26 120.6 86 62.8
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 9.5e-26 120.2 82 67.1
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 9.5e-26 120.2 86 64.0
Solyc06g054430.1 Solanum lycopersicum HOM05D002762 ORTHO05D004643 9.5e-26 120.2 86 64.0
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 1.2e-25 119.8 104 51.0
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 1.6e-25 119.4 87 67.8
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 1.6e-25 119.4 86 62.8
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 2.8e-25 118.6 82 67.1
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 3.6e-25 118.2 82 63.4
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 4.7e-25 117.9 86 62.8
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 4.7e-25 117.9 86 62.8
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 4.7e-25 117.9 86 62.8
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 6.2e-25 117.5 86 62.8
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 8.1e-25 117.1 82 65.9
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 8.1e-25 117.1 89 60.7
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 8.1e-25 117.1 86 61.6
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 8.1e-25 117.1 86 60.5
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 1.1e-24 116.7 86 61.6
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 1.1e-24 116.7 86 64.0
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 1.4e-24 116.3 86 62.8
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 1.4e-24 116.3 86 64.0
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 1.4e-24 116.3 82 68.3
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 1.8e-24 115.9 89 59.6
CARHR222230 Cardamine hirsuta HOM05D002762 ORTHO05D004643 2.4e-24 115.5 86 60.5
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 2.4e-24 115.5 89 59.6
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 2.4e-24 115.5 86 62.8
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 2.4e-24 115.5 86 62.8
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 2.4e-24 115.5 86 61.6
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 2.4e-24 115.5 93 59.1
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 3.1e-24 115.2 86 62.8
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 3.1e-24 115.2 86 62.8
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 3.1e-24 115.2 86 62.8
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 3.1e-24 115.2 86 64.0
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 3.1e-24 115.2 89 60.7
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 4.0e-24 114.8 86 62.8
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 4.0e-24 114.8 82 67.1
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 6.8e-24 114.0 82 64.6
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 6.8e-24 114.0 82 64.6
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 8.9e-24 113.6 86 61.6
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 8.9e-24 113.6 82 65.9
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 8.9e-24 113.6 86 59.3
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.4e-23 111.7 88 61.4
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.4e-23 111.7 88 61.4
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 3.4e-23 111.7 86 58.1
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 4.4e-23 111.3 82 64.6
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 4.4e-23 111.3 84 67.9
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 5.8e-23 110.9 92 56.5
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 7.6e-23 110.5 84 67.9
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 7.6e-23 110.5 82 64.6
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 7.6e-23 110.5 82 64.6
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 2.2e-22 109.0 86 58.1
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 2.9e-22 108.6 87 59.8
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 3.8e-22 108.2 86 60.5
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 3.8e-22 108.2 86 60.5
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 4.9e-22 107.8 86 60.5
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 4.9e-22 107.8 86 59.3
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 8.4e-22 107.1 86 58.1
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 1.4e-21 106.3 86 57.0
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 1.4e-21 106.3 83 61.4
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 2.4e-21 105.5 82 59.8
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 2.4e-21 105.5 82 61.0
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.2e-21 105.1 82 59.8
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 7.1e-21 104.0 93 55.9
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 9.2e-21 103.6 91 56.0
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 9.2e-21 103.6 91 56.0
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 9.2e-21 103.6 82 58.5
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.1e-20 102.4 91 54.9
MBI19_g20287_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 2.7e-20 102.1 88 58.0
Cpa.g.c35915 Carica papaya HOM05D002762 ORTHO05D004643 3.5e-20 101.7 82 53.7
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.3e-19 99.0 91 52.7
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 1.5e-18 96.3 82 53.7
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 4.3e-18 94.7 96 47.9
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 7.3e-18 94.0 96 49.0
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 6.2e-17 90.9 83 53.0
CSS0038196 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 5.3e-16 87.8 86 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 8.4e-14 80.5 91 42.9
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 3.2e-13 78.6 79 46.8
SEGI_13295 Sequoiadendron giganteum HOM05D002762 ORTHO05D004643 9.3e-13 77.0 83 47.0
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 1.2e-12 76.6 82 50.0
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 1.0e-11 73.6 88 45.5
Dinv44461 Davidia involucrata HOM05D002762 ORTHO05D004643 1.1e-10 70.1 44 72.7
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 3.6e-09 65.1 86 40.7
CAN.G1812.3 Capsicum annuum HOM05D001905 ORTHO05D001820 3.4e-07 58.5 73 45.2
Os10g0148800 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 9.9e-07 57.0 76 35.5
Pp3c6_11940 Physcomitrium patens HOM05D002762 ORTHO05D004643 1.7e-06 56.2 82 36.6
Nitab4.5_0010118g0010 Nicotiana tabacum HOM05D001905 ORTHO05D001820 3.8e-06 55.1 65 44.6
SGA_v2.0_scaffold143G35793 Striga asiatica HOM05D001905 ORTHO05D001820 3.8e-06 55.1 65 46.2
Pp3c6_5440 Physcomitrium patens HOM05D002762 ORTHO05D004643 8.4e-06 53.9 80 38.8


User provided reference genes

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