Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 4.4e-62 241.1 122 100.0
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 8.1e-40 167.2 85 100.0
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 3.1e-39 165.2 85 98.8
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.6e-38 162.2 85 96.5
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.4e-38 161.8 85 96.5
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.4e-38 161.8 85 96.5
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.4e-38 161.8 85 96.5
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.3e-37 159.8 85 94.1
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 1.7e-37 159.5 85 94.1
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.7e-37 159.5 85 95.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.9e-37 158.7 83 96.4
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 2.9e-37 158.7 85 94.1
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 3.7e-37 158.3 85 94.1
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 3.7e-37 158.3 85 94.1
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 6.4e-37 157.5 85 94.1
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.4e-36 154.5 109 73.4
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 5.4e-36 154.5 85 92.9
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 7.1e-36 154.1 85 91.8
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.2e-36 153.7 85 90.6
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.2e-36 153.7 85 90.6
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.1e-35 152.5 85 90.6
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.7e-35 152.1 85 89.4
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.7e-35 152.1 85 89.4
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 91.8
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.5e-35 151.8 85 89.4
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.6e-35 151.4 85 89.4
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.0e-35 151.0 85 88.2
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 6.0e-35 151.0 85 88.2
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 7.8e-35 150.6 120 69.2
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.0e-34 150.2 83 89.2
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.0e-34 150.2 83 90.4
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.3e-34 149.8 85 88.2
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.3e-34 149.8 85 90.6
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.7e-34 149.4 86 90.7
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.0e-34 148.7 83 89.2
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 3.0e-34 148.7 85 88.2
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.9e-34 148.3 85 88.2
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.9e-34 148.3 85 87.1
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.5e-33 146.4 84 89.3
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.3e-33 145.2 97 75.3
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.6e-33 143.7 80 90.0
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-32 142.9 85 85.9
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-32 142.9 85 85.9
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.6e-32 142.9 85 85.9
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.1e-32 142.5 82 87.8
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-32 142.1 85 85.9
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-32 142.1 85 85.9
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-32 142.1 85 85.9
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.4e-31 139.0 79 89.9
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.4e-31 139.0 85 85.9
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.2e-31 137.9 85 80.0
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.2e-30 136.7 83 83.1
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.4e-30 134.8 84 79.8
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 7.6e-30 134.0 85 83.5
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 7.6e-30 134.0 85 83.5
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-29 133.3 84 77.4
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-29 133.3 84 77.4
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.7e-29 132.9 84 78.6
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-29 132.5 80 82.5
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-29 132.5 85 83.5
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.4e-28 129.8 81 79.0
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.9e-28 129.4 84 77.4
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-26 122.5 81 74.1
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.1e-26 121.3 69 89.9
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 6.6e-26 120.9 117 58.1
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 8.7e-26 120.6 84 71.4
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 8.7e-26 120.6 84 71.4
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 1.5e-25 119.8 117 54.7
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 3.3e-25 118.6 84 69.0
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.1e-24 115.9 85 67.1
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 3.6e-24 115.2 83 67.5
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 3.6e-24 115.2 84 66.7
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.4e-23 113.2 108 60.2
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.4e-23 113.2 76 73.7
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.8e-23 112.8 73 74.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.1e-23 112.1 85 70.6
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.3e-23 111.3 64 89.1
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 5.8e-22 107.8 67 79.1
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 5.8e-22 107.8 73 72.6
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 5.8e-22 107.8 73 72.6
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 5.8e-22 107.8 73 72.6
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 5.8e-22 107.8 73 72.6
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 5.8e-22 107.8 73 72.6
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.2e-21 105.9 72 79.2
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.2e-21 105.9 67 79.1
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 2.9e-21 105.5 66 81.8
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.1e-20 103.6 82 67.1
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.1e-20 103.6 84 64.3
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.4e-20 102.4 56 91.1
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 5.4e-20 101.3 57 89.5
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 4.6e-19 98.2 61 80.3
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.1e-17 93.6 81 59.3
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 3.3e-17 92.0 79 55.7
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 4.3e-17 91.7 51 88.2
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.3e-17 91.7 81 59.3
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 4.3e-17 91.7 81 59.3
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.3e-17 91.7 81 59.3
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.3e-17 91.7 81 59.3
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.3e-17 91.7 81 59.3
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.3e-17 91.7 81 59.3
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.3e-17 91.7 81 59.3
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.3e-17 91.7 81 59.3
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.3e-17 90.9 76 61.8
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.3e-16 90.1 81 59.3
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.6e-16 89.7 81 58.0
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 2.8e-16 89.0 81 58.0
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.8e-16 88.2 81 56.8
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.1e-15 87.0 74 60.8
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 1.3e-13 80.1 45 84.4
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.7e-13 79.7 41 97.6
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 1.7e-13 79.7 86 50.0
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 2.9e-13 79.0 47 83.0
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 3.8e-13 78.6 45 84.4
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 8.4e-13 77.4 42 90.5
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-12 75.1 37 100.0
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 4.2e-12 75.1 37 100.0
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 5.4e-12 74.7 37 97.3
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 5.4e-12 74.7 37 97.3
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 9.3e-12 73.9 37 97.3
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.6e-11 73.2 37 97.3
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-11 73.2 37 94.6
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-11 73.2 38 92.1
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 4.6e-11 71.6 37 94.6
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 1.8e-10 69.7 37 91.9
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-10 69.3 35 94.3
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 2.3e-10 69.3 37 86.5
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 5.1e-10 68.2 54 64.8
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.1e-09 67.0 37 89.2
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 2.5e-09 65.9 44 70.5
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.3e-08 63.5 47 66.0
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 6.2e-08 61.2 36 80.6
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 6.2e-08 61.2 37 75.7
Oeu012815.1 Olea europaea HOM05D002578 ORTHO05D290875 3.1e-07 58.9 64 54.7
Hund08116 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.8e-06 54.7 40 65.0


User provided reference genes

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