Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 2.4e-37 158.3 78 97.4
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.9e-35 151.4 78 93.6
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.1e-34 149.4 78 93.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.1e-34 149.4 78 93.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.1e-34 149.4 78 93.6
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.1e-34 149.4 78 93.6
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 1.9e-34 148.7 72 98.6
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.4e-34 146.4 78 92.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.6e-33 145.6 78 87.2
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 2.3e-32 141.7 78 83.3
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.5e-31 139.0 78 87.2
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.6e-31 138.3 70 87.1
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 4.4e-31 137.5 78 88.5
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 7.5e-31 136.7 70 85.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 9.8e-31 136.3 73 82.2
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 9.8e-31 136.3 70 84.3
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.3e-30 136.0 73 79.5
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 1.7e-30 135.6 75 80.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-30 135.6 72 80.6
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.2e-30 135.2 72 80.6
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 3.7e-30 134.4 70 81.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 8.3e-30 133.3 73 79.5
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.4e-29 132.5 70 81.4
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.4e-29 132.5 72 79.2
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.4e-29 132.5 70 81.4
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 3.1e-29 131.3 70 80.0
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 5.4e-29 130.6 77 79.2
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 5.4e-29 130.6 78 76.9
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 9.1e-29 129.8 70 82.9
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 9.1e-29 129.8 70 82.9
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 9.1e-29 129.8 70 82.9
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.2e-28 129.4 72 77.8
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.0e-28 128.6 71 80.3
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 2.7e-28 128.3 70 81.4
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 2.7e-28 128.3 70 81.4
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 2.7e-28 128.3 70 81.4
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 3.5e-28 127.9 71 76.1
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 4.5e-28 127.5 71 74.6
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 4.5e-28 127.5 70 80.0
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 4.5e-28 127.5 80 75.0
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 5.9e-28 127.1 73 74.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.7e-28 126.7 72 79.2
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.7e-28 126.7 72 79.2
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 7.7e-28 126.7 70 77.1
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.0e-27 126.3 72 75.0
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.0e-27 126.3 72 75.0
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 1.0e-27 126.3 72 75.0
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.7e-27 125.6 73 72.6
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 2.2e-27 125.2 70 78.6
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.9e-27 124.8 70 78.6
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 5.0e-27 124.0 77 74.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 5.0e-27 124.0 59 100.0
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 5.0e-27 124.0 74 73.0
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.1e-26 122.9 72 72.2
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.5e-26 122.5 73 71.2
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.2e-25 119.4 68 79.4
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-25 117.9 70 85.7
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-25 117.9 70 85.7
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 3.6e-25 117.9 70 85.7
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-25 117.9 70 85.7
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 3.6e-25 117.9 70 85.7
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.0e-24 116.3 71 76.1
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.0e-24 116.3 72 72.2
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 6.8e-24 113.6 68 79.4
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 1.2e-23 112.8 70 82.9
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.3e-22 109.4 77 68.8
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-22 109.4 77 68.8
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 6.3e-22 107.1 71 67.6
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-21 106.3 76 67.1
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.1e-21 106.3 65 78.5
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.4e-21 105.9 77 63.6
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.8e-21 105.5 70 67.1
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.6e-20 102.4 70 68.6
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 5.9e-20 100.5 76 72.4
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 3.8e-19 97.8 78 64.1
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.8e-19 97.8 56 85.7
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 5.0e-19 97.4 53 77.4
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 2.5e-18 95.1 63 71.4
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 3.3e-18 94.7 55 76.4
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.3e-18 94.7 55 76.4
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.3e-18 94.7 55 76.4
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 3.3e-18 94.7 55 76.4
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.2e-18 94.4 63 71.4
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 5.5e-18 94.0 63 69.8
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.2e-17 92.8 80 70.0
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 2.6e-15 85.1 76 57.9
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.4e-15 84.3 55 72.7
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.9e-14 80.9 80 62.5
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 4.9e-14 80.9 80 56.2
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.8e-13 79.0 59 64.4
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.1e-13 77.8 80 55.0
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 7.0e-13 77.0 58 67.2
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 7.0e-13 77.0 58 67.2
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.0e-12 75.5 70 44.3
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 5.9e-12 73.9 80 57.5
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.0e-11 73.2 45 82.2
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.3e-11 72.8 85 52.9
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 2.3e-11 72.0 38 84.2
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-10 69.7 35 94.3
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-10 69.7 35 94.3
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-10 69.7 35 94.3
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.9e-10 68.9 40 85.0
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 3.3e-10 68.2 67 40.3
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.2e-09 66.2 61 67.2
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 2.8e-09 65.1 68 44.1
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.8e-09 65.1 44 77.3
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 6.2e-09 63.9 39 82.1
COL.COLO4_02277 Corchorus olitorius HOM05D002824 ORTHO05D008771 5.2e-08 60.8 43 76.7
MELO3C030417.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.8e-08 60.5 61 63.9
Nitab4.5_0002229g0270 Nicotiana tabacum HOM05D002824 ORTHO05D008771 7.5e-07 57.0 31 83.9
EL10Ac5g11781 Beta vulgaris HOM05D002824 ORTHO05D008771 2.9e-06 55.1 35 77.1
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.9e-06 55.1 30 86.7


User provided reference genes

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