Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 7.7e-89 330.5 171 100.0
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 2.4e-58 229.2 155 80.6
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 2.6e-52 209.1 160 72.5
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.3e-48 196.8 174 65.5
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 2.2e-43 179.5 165 59.4
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.4e-43 177.9 164 62.8
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 6.4e-43 177.9 165 58.2
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 8.4e-43 177.6 164 62.8
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 8.4e-43 177.6 164 62.8
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 8.4e-43 177.6 163 62.6
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 8.4e-43 177.6 165 58.2
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.1e-42 177.2 163 60.7
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.9e-42 176.4 165 58.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.9e-42 176.4 182 57.7
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.4e-42 174.9 164 61.6
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 9.3e-42 174.1 164 60.4
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.2e-41 173.7 164 59.8
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.2e-41 173.7 164 57.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.6e-41 173.3 165 61.8
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.1e-41 172.9 162 63.0
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.7e-41 172.6 164 60.4
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 3.5e-41 172.2 182 56.0
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 3.5e-41 172.2 164 59.1
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 7.8e-41 171.0 161 60.2
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.0e-40 170.6 165 57.6
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.7e-40 169.9 164 59.1
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 2.3e-40 169.5 164 57.3
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.3e-40 169.5 164 59.8
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 5.1e-40 168.3 185 55.7
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.5e-39 166.8 164 58.5
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.9e-39 166.4 161 60.9
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.5e-39 166.0 162 59.9
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 3.3e-39 165.6 162 58.6
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 5.6e-39 164.9 167 56.3
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.6e-39 164.9 164 54.9
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 9.6e-39 164.1 163 62.0
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 9.6e-39 164.1 164 57.9
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 9.6e-39 164.1 165 55.8
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.3e-38 163.7 164 57.3
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.1e-38 162.9 163 55.2
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.8e-38 162.5 182 54.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.6e-38 162.2 161 60.9
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 6.2e-38 161.4 163 55.8
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.1e-38 161.0 170 54.7
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.4e-37 160.2 182 54.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.8e-37 159.8 164 57.3
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 1.8e-37 159.8 163 56.4
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.8e-37 159.8 182 54.4
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.8e-37 159.8 161 57.8
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.8e-37 159.8 161 57.8
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-37 159.5 161 57.8
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.4e-37 159.5 164 56.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.0e-37 158.7 164 54.9
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 5.3e-37 158.3 164 56.7
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.3e-37 158.3 164 55.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 6.9e-37 157.9 155 62.6
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 9.0e-37 157.5 165 57.0
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.0e-37 157.5 166 53.0
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-36 157.1 161 56.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.2e-36 157.1 163 56.4
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-36 156.8 161 56.5
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.5e-36 156.8 161 54.0
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.5e-36 156.8 161 55.9
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.0e-36 156.4 162 56.2
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.6e-36 156.0 166 53.6
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 3.4e-36 155.6 164 54.3
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.4e-36 155.6 163 57.1
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.4e-36 155.2 163 54.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 4.4e-36 155.2 163 55.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 7.6e-36 154.5 168 54.2
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.9e-35 152.5 162 53.7
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.8e-35 152.1 163 53.4
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.8e-35 152.1 168 53.6
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.8e-35 152.1 164 54.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 4.9e-35 151.8 186 50.5
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.4e-35 151.4 163 54.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 6.4e-35 151.4 169 53.8
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 6.4e-35 151.4 164 52.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.9e-34 149.8 165 53.9
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 5.4e-34 148.3 161 59.6
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 5.4e-34 148.3 159 56.6
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 9.3e-34 147.5 166 53.0
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 9.3e-34 147.5 167 53.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.2e-33 147.1 169 51.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.1e-33 146.4 161 56.5
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.7e-33 146.0 178 52.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.5e-33 145.6 166 52.4
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.3e-32 143.7 164 53.7
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.9e-32 142.1 164 52.4
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 3.9e-32 142.1 174 50.0
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.1e-32 141.7 161 55.3
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.7e-32 141.0 165 52.1
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.9e-31 139.8 161 54.0
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.5e-31 139.4 178 51.7
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.5e-31 139.4 165 53.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.3e-31 139.0 165 50.3
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.3e-31 138.7 147 54.4
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 7.3e-31 137.9 137 62.8
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 7.3e-31 137.9 165 51.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 7.3e-31 137.9 165 51.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.3e-30 137.1 165 54.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.6e-30 136.7 165 50.3
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.8e-30 136.0 167 54.5
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.8e-30 136.0 143 55.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.6e-30 135.6 165 50.3
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 4.8e-30 135.2 150 55.3
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.8e-30 135.2 150 55.3
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 8.1e-30 134.4 166 50.0
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 2.4e-29 132.9 180 48.3
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.4e-29 132.9 161 52.2
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 4.0e-29 132.1 168 50.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.2e-28 130.6 156 52.6
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-28 130.6 156 50.0
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 5.8e-28 128.3 183 49.7
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 7.6e-28 127.9 163 50.3
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.3e-27 127.1 163 47.9
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 4.9e-27 125.2 163 47.2
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 4.9e-27 125.2 163 48.5
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.4e-27 124.4 145 50.3
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.1e-26 124.0 173 44.5
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 1.9e-26 123.2 162 50.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 9.3e-26 120.9 164 47.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.2e-25 120.6 164 47.0
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.2e-25 120.6 164 47.6
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.2e-25 120.6 164 47.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-25 120.6 145 49.7
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.6e-25 120.2 183 47.5
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 2.1e-25 119.8 164 47.0
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.1e-25 119.8 164 47.0
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.7e-25 119.4 145 50.3
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 4.6e-25 118.6 184 43.5
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.6e-22 110.2 188 40.4
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.9e-18 96.7 80 62.5
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 4.2e-18 95.5 57 84.2
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.7e-17 92.8 171 40.9
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.5e-17 92.4 186 34.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.0e-16 90.9 170 38.2
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.8e-16 90.1 87 57.5
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.9e-15 86.7 174 36.8
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.1e-13 79.3 97 53.6
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 3.1e-13 79.3 176 34.1
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 2.6e-12 76.3 130 43.8


User provided reference genes

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