Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 3.1e-122 441.8 221 100.0
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 3.4e-97 358.6 222 81.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 8.7e-93 344.0 223 78.5
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.4e-71 273.5 181 74.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 4.2e-71 271.9 181 73.5
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.6e-70 268.9 172 75.6
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.6e-70 268.9 172 75.6
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 6.1e-70 268.1 181 69.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.8e-69 266.5 160 80.6
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.1e-68 263.8 181 70.7
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 5.7e-68 261.5 169 75.1
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.3e-67 260.4 195 67.2
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 3.7e-67 258.8 190 70.5
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 4.8e-67 258.5 160 75.0
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.1e-66 257.3 170 72.4
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.1e-66 257.3 210 61.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.1e-66 257.3 183 69.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 3.1e-66 255.8 156 76.9
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 5.3e-66 255.0 195 64.6
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 5.3e-66 255.0 157 74.5
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 5.3e-66 255.0 154 77.3
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 9.1e-66 254.2 165 73.3
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 9.1e-66 254.2 165 75.2
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.2e-65 253.8 201 62.7
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.2e-65 253.8 185 68.6
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.6e-65 253.4 157 76.4
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.6e-65 253.4 211 60.2
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.6e-65 253.4 157 73.9
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.6e-65 253.4 158 74.1
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 2.0e-65 253.1 189 65.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 7.7e-65 251.1 194 63.9
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 1.0e-64 250.8 157 73.9
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 1.0e-64 250.8 153 77.8
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.3e-64 250.4 153 77.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-64 250.0 183 68.9
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 2.2e-64 249.6 156 73.7
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.2e-64 249.6 210 59.0
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.2e-64 249.6 157 75.2
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.9e-64 249.2 155 76.8
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 3.8e-64 248.8 213 59.2
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.8e-64 248.8 157 73.2
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 5.0e-64 248.4 153 75.2
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.5e-64 248.1 153 75.8
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 8.5e-64 247.7 169 69.8
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 8.5e-64 247.7 186 65.6
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 8.5e-64 247.7 185 65.4
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.1e-63 247.3 167 71.9
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.5e-63 246.9 154 74.0
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.5e-63 246.1 181 64.6
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 3.2e-63 245.7 156 73.7
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 3.2e-63 245.7 157 73.9
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 4.2e-63 245.4 156 74.4
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.2e-63 245.4 181 64.1
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 5.5e-63 245.0 154 74.7
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.5e-63 245.0 156 73.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 9.4e-63 244.2 181 63.5
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.2e-62 243.8 154 74.0
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.2e-62 243.8 157 72.6
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.6e-62 243.4 167 69.5
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.1e-62 243.0 153 73.2
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 2.1e-62 243.0 157 72.6
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.7e-62 242.7 150 76.7
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 3.6e-62 242.3 191 61.8
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 4.7e-62 241.9 155 73.5
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 6.1e-62 241.5 154 72.7
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 6.1e-62 241.5 160 71.2
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 8.0e-62 241.1 160 71.2
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-61 240.4 154 72.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.8e-61 240.0 153 74.5
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.8e-61 240.0 153 74.5
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.3e-61 239.6 153 74.5
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 3.0e-61 239.2 154 71.4
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 3.0e-61 239.2 154 71.4
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.0e-61 239.2 154 71.4
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.0e-61 238.8 153 73.2
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 6.7e-61 238.0 205 61.0
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-60 237.3 153 71.9
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.5e-60 236.9 157 72.0
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.0e-60 236.5 189 60.8
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 2.0e-60 236.5 169 69.2
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.0e-60 236.5 160 69.4
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.6e-60 236.1 189 60.8
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.6e-60 236.1 169 69.8
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.3e-60 235.7 189 60.3
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 3.3e-60 235.7 154 72.1
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 3.3e-60 235.7 154 72.7
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 4.4e-60 235.3 190 62.6
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 4.4e-60 235.3 154 70.8
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 4.4e-60 235.3 157 70.1
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.7e-59 233.4 157 70.1
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.2e-59 233.0 149 73.2
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.8e-59 232.6 154 71.4
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.4e-58 230.3 154 72.7
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.4e-58 229.6 186 62.9
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 3.1e-58 229.2 229 53.7
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.0e-57 226.5 145 72.4
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 3.5e-57 225.7 212 57.5
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.9e-56 222.6 195 60.5
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 5.0e-56 221.9 214 53.3
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 4.2e-55 218.8 148 69.6
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 6.1e-54 214.9 158 66.5
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 8.8e-53 211.1 134 76.1
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.5e-52 210.3 173 59.5
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 2.0e-52 209.9 203 53.2
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 5.9e-49 198.4 153 61.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.9e-47 193.4 174 56.3
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 2.7e-46 189.5 122 74.6
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.6e-46 189.1 142 59.9
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.1e-46 188.3 172 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.5e-44 183.7 154 55.8
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.6e-44 183.0 120 72.5
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 5.6e-39 165.2 142 61.3
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 1.6e-38 163.7 154 54.5
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.6e-33 145.6 84 79.8
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.9e-31 140.2 135 56.3
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.9e-31 140.2 135 56.3
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.4e-26 124.0 84 73.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 6.0e-25 118.6 74 75.7
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 7.3e-23 111.7 104 48.1
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 2.1e-22 110.2 114 45.6
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 1.2e-20 104.4 134 41.0
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.0e-20 103.6 115 40.0
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 1.7e-19 100.5 60 75.0
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 3.6e-14 82.8 82 50.0
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-12 77.4 62 62.9
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.4e-10 70.9 56 58.9
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 7.1e-10 68.6 46 67.4
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.6e-09 67.4 40 77.5


User provided reference genes

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