Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-245 852.8 417 100.0
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 6.3e-193 677.6 417 76.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.5e-191 672.9 417 77.2
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.4e-187 659.8 417 76.0
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 6.2e-148 528.1 411 61.8
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 8.0e-148 527.7 420 61.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.5e-146 523.5 412 60.4
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.2e-145 519.6 414 60.4
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 6.4e-145 518.1 417 60.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 6.4e-145 518.1 412 60.7
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 8.3e-145 517.7 415 61.0
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.7e-143 512.7 418 59.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.7e-143 512.7 416 60.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.6e-143 511.9 414 60.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.0e-142 510.8 402 60.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.7e-142 510.0 417 59.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.7e-142 510.0 417 59.7
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.3e-142 509.6 417 59.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.3e-142 509.6 417 59.7
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.3e-142 509.6 417 59.7
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.3e-142 509.6 413 58.8
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.3e-142 509.6 414 58.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.3e-142 509.6 412 60.0
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.0e-142 509.2 414 59.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 6.6e-142 508.1 415 58.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 8.6e-142 507.7 416 58.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 8.6e-142 507.7 417 57.8
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.5e-141 506.9 416 58.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.9e-141 506.5 410 59.5
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 5.6e-141 505.0 417 59.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.3e-141 504.6 416 59.1
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 7.3e-141 504.6 410 59.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.3e-141 504.6 415 59.3
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 9.5e-141 504.2 416 59.1
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.2e-140 503.8 417 59.7
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.6e-140 502.3 413 58.6
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.6e-140 502.3 414 58.9
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.6e-140 502.3 404 59.4
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.6e-140 502.3 410 58.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.7e-140 501.9 409 59.4
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.1e-140 501.1 416 58.4
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 8.1e-140 501.1 417 57.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 8.1e-140 501.1 416 57.5
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.4e-139 500.4 423 57.0
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.8e-139 500.0 418 57.9
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.3e-139 499.6 415 58.1
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-139 499.6 414 58.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-139 499.6 414 58.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.1e-139 499.2 414 57.5
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.1e-139 499.2 408 58.6
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.0e-139 498.8 414 58.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.0e-139 498.8 415 57.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 5.2e-139 498.4 415 58.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.8e-139 498.0 411 57.9
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.2e-138 497.3 416 57.9
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.5e-138 496.9 414 58.5
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.0e-138 496.5 414 57.5
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.6e-138 496.1 408 58.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.6e-138 496.1 415 58.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.4e-138 495.7 411 57.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.8e-138 495.0 411 57.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 5.8e-138 495.0 415 57.8
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.7e-137 493.4 412 56.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.7e-137 493.4 412 58.7
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.9e-137 492.7 420 58.8
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.9e-137 492.7 411 57.2
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.4e-137 491.5 415 57.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.3e-137 491.1 415 56.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.3e-137 491.1 416 56.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.9e-136 490.0 413 56.4
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.2e-136 489.2 416 56.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.4e-136 488.4 408 56.6
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.1e-136 488.0 410 58.5
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.2e-136 487.6 412 58.3
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.2e-135 487.3 415 58.8
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.5e-135 485.7 414 58.5
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 4.6e-135 485.3 415 55.4
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.0e-134 484.2 411 55.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-134 483.8 408 57.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.9e-134 482.3 402 58.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 3.9e-134 482.3 416 57.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.1e-134 481.9 414 55.3
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.1e-134 481.9 409 57.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.5e-133 479.6 410 58.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.3e-133 478.8 414 57.5
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.3e-133 478.8 411 54.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.3e-133 478.0 410 57.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.4e-131 473.8 412 55.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-131 473.8 407 56.5
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.8e-131 473.4 411 56.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.3e-131 473.0 405 58.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.5e-130 470.3 399 56.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 9.9e-130 467.6 400 56.5
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.2e-129 466.5 400 56.8
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.9e-129 466.1 404 57.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.9e-128 463.4 400 55.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.1e-128 462.2 398 55.5
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.1e-128 462.2 398 55.5
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.1e-127 459.9 403 55.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.7e-127 459.5 403 55.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.0e-127 458.4 402 54.2
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.7e-126 456.8 411 54.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.7e-126 456.8 402 54.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 3.0e-126 456.1 400 56.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 5.1e-126 455.3 416 55.5
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.6e-126 454.5 399 56.6
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.9e-125 453.4 408 54.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-125 453.4 402 53.2
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.4e-123 447.2 399 52.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.1e-123 446.0 399 55.9
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 5.2e-123 445.3 400 53.5
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 3.4e-122 442.6 397 55.7
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-121 439.9 387 55.8
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-121 439.9 387 55.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 7.8e-119 431.4 408 51.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.0e-118 431.0 399 54.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.5e-117 426.4 423 51.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.6e-114 416.4 413 52.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.8e-114 415.2 410 48.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 4.9e-113 412.1 416 50.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.7e-110 401.4 407 49.1
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.8e-108 396.4 398 51.3
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.4e-106 389.4 406 48.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 7.6e-106 388.3 405 48.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.2e-103 380.9 421 46.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.9e-101 373.6 383 49.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.1e-99 366.3 410 46.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.5e-98 364.0 418 45.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.9e-96 357.1 417 44.6
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.9e-96 357.1 398 45.7
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.9e-93 347.1 415 43.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.6e-87 327.4 416 42.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.8e-83 313.9 409 44.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.1e-77 294.7 401 42.1
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.8e-76 290.0 414 40.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.9e-75 285.4 252 56.3
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 9.4e-72 275.0 412 40.3
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.4e-69 266.2 412 38.8
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.4e-67 261.2 415 39.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.4e-67 260.4 413 37.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.1e-67 258.5 291 45.7
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.6e-61 240.4 197 59.9
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 4.1e-59 233.0 164 71.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 6.3e-52 209.1 441 32.7
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.9e-49 200.3 243 43.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.8e-49 199.9 169 53.3
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.7e-34 150.6 378 29.6
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 9.5e-32 142.1 127 56.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 4.0e-30 136.7 96 66.7
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 9.2e-27 125.6 80 73.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.4e-21 106.7 323 26.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.5e-16 90.9 411 25.5
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.9e-08 64.7 40 67.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.4e-06 57.8 51 49.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.4e-06 57.8 119 36.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.9e-06 56.2 223 24.7


User provided reference genes

Program Settings